Plugins

Micro-Manager offers a number of built-in Plugins for special applications in microscopy:

• AcquireMultipleRegions
• ASI Gamepad Plugin
• AssembleData
• AutoLase
• EMU
• Flat-Field Correction
• FrameProcessor : Perform live frames image processing.
• HCS Site Generator
• Intelligent Acquisition
• Image Flipper
• Live Replay
• Localization Microscopy
• MicroMagellan
• Mightex Polygon
• Mist Stitching
• Multi-Andor Control
• MultiChannelShading
• PairedStageControl
• Point and Shoot Analysis
• PM/QI Auto White Balance
• Photon Transfer Curve Assistant
• Projector
• Slide Explorer
• SplitView
• Live Tracking

In addition, plugins are available from third parties:

• Biomedical Imaging Group
  • Multiwell Plate Class
  • 3D Deconvolution
  • Remote interfacing (REST server)
• Firewire camera/LED synchronization, by Alex Hodge, Cambridge
• Import Micro-Manager data into Image-Pro

See also Writing plugins for Micro-Manager

And also look at our paper describing hardware synchronization, simultaneous use of multiple cameras, projection of patterned light onto a specimen, live slide mapping, imaging with multi-well plates, particle localization and tracking, and high-speed imaging.