org.micromanager.api

Interface Autofocus

public interface Autofocus

Method Summary

Modifier and Type	Method and Description
void	applySettings()
double	computeScore(ij.process.ImageProcessor impro) Computes a focus score for the given image
void	enableContinuousFocus(boolean enable)
void	focus(double coarseStep, int numCoarse, double fineStep, int numFine) OBSOLETE - do not use this method.
double	fullFocus()
double	getCurrentFocusScore()
java.lang.String	getDeviceName()
int	getNumberOfImages()
org.micromanager.utils.PropertyItem[]	getProperties()
org.micromanager.utils.PropertyItem	getProperty(java.lang.String key)
java.lang.String[]	getPropertyNames()
java.lang.String	getPropertyValue(java.lang.String name)
java.lang.String	getVerboseStatus()
double	incrementalFocus()
boolean	isContinuousFocusEnabled()
boolean	isContinuousFocusLocked()
void	saveSettings()
void	setApp(ScriptInterface app)
void	setProperty(org.micromanager.utils.PropertyItem p)
void	setPropertyValue(java.lang.String name, java.lang.String value)

Method Detail

applySettings

void applySettings()

saveSettings

void saveSettings()

setApp

void setApp(ScriptInterface app)

fullFocus

double fullFocus()
          throws org.micromanager.utils.MMException

Throws:

org.micromanager.utils.MMException

incrementalFocus

double incrementalFocus()
                 throws org.micromanager.utils.MMException

Throws:

org.micromanager.utils.MMException

getNumberOfImages

int getNumberOfImages()

getVerboseStatus

java.lang.String getVerboseStatus()

getProperties

org.micromanager.utils.PropertyItem[] getProperties()

getPropertyNames

java.lang.String[] getPropertyNames()

getProperty

org.micromanager.utils.PropertyItem getProperty(java.lang.String key)
                                         throws org.micromanager.utils.MMException

Throws:

org.micromanager.utils.MMException

setProperty

void setProperty(org.micromanager.utils.PropertyItem p)
          throws org.micromanager.utils.MMException

Throws:

org.micromanager.utils.MMException

getPropertyValue

java.lang.String getPropertyValue(java.lang.String name)
                           throws org.micromanager.utils.MMException

Throws:

org.micromanager.utils.MMException

setPropertyValue

void setPropertyValue(java.lang.String name,
                      java.lang.String value)
               throws org.micromanager.utils.MMException

Throws:

org.micromanager.utils.MMException

getCurrentFocusScore

double getCurrentFocusScore()

getDeviceName

java.lang.String getDeviceName()

enableContinuousFocus

void enableContinuousFocus(boolean enable)
                    throws org.micromanager.utils.MMException

Throws:

org.micromanager.utils.MMException

isContinuousFocusEnabled

boolean isContinuousFocusEnabled()
                          throws org.micromanager.utils.MMException

Throws:

org.micromanager.utils.MMException

isContinuousFocusLocked

boolean isContinuousFocusLocked()
                         throws org.micromanager.utils.MMException

Throws:

org.micromanager.utils.MMException

computeScore

double computeScore(ij.process.ImageProcessor impro)

Computes a focus score for the given image

Parameters:

impro -

Returns:

calculated score

focus

void focus(double coarseStep,
           int numCoarse,
           double fineStep,
           int numFine)
    throws org.micromanager.utils.MMException

OBSOLETE - do not use this method.

Throws:

org.micromanager.utils.MMException