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Papers citing Micro-Manager

Papers citing and/or acknowledging the use of Micro-Manager

2015

Bump, S. (2015). Microscopic characterization of functionalized paper as a platform for 3D cell cultures. Ph.D. Thesis. Technische Universität.

Lin, S., Barrette, A.M., Chapin, C., Gonzales, L.W., Gonzalez, R.F., Dobbs, L.G., and Ballard, P.L. (2015). Expression of human carcinoembryonic antigen‐related cell adhesion molecule 6 and alveolar progenitor cells in normal and injured lungs of transgenic mice. Physiological Reports 3, e12657 doi:10.14814%2Fphy2.12657.

Sevenler, D., and Selim Ünlü, M. (2015). Numerical techniques for high-throughput reflectance interference biosensing. Journal of Modern Optics 1–6 doi:10.1080%2F09500340.2015.1117668.

Morozova, N., Sabantsev, A., Bogdanova, E., Fedorova, Y., Maikova, A., Vedyaykin, A., Rodic, A., Djordjevic, M., Khodorkovskii, M., and Severinov, K. (2015). Temporal dynamics of methyltransferase and restriction endonuclease accumulation in individual cells after introducing a restriction-modification system. Nucl. Acids Res. gkv1490 doi:10.1093%2Fnar%2Fgkv1490.

Will, C., Messlinger, K., and Fischer, M.J.M. (2016). Vessel diameter measurements at the medullary brainstem in vivo as an index of trigeminal activity. Brain Research 1632, 51–57 doi:10.1016%2Fj.brainres.2015.12.013.

Bazin, D., Jouanneau, C., Bertazzo, S., Sandt, C., Dessombz, A., Réfrégiers, M., Dumas, P., Frederick, J., Haymann, J.-P., Letavernier, E., et al. Combining field effect scanning electron microscopy, deep UV fluorescence, Raman, classical and synchrotron radiation Fourier transform Infra-Red Spectroscopy in the study of crystal-containing kidney biopsies. Comptes Rendus Chimie doi:10.1016%2Fj.crci.2015.03.001.

Urban, N., Wang, L., Kwiek, S., Rademann, J., Kuebler, W.M., and Schaefer, M. (2016). Identification and Validation of Larixyl Acetate as a Potent TRPC6 Inhibitor. Mol Pharmacol 89, 197–213 doi:10.1124%2Fmol.115.100792 .

Cinquin, B., Maigre, L., Pinet, E., Chevalier, J., Stavenger, R.A., Mills, S., Réfrégiers, M., and Pagès, J.-M. (2015). Microspectrometric insights on the uptake of antibiotics at the single bacterial cell level. Scientific Reports 5, 17968 doi:10.1038%2Fsrep17968.

Yun, K., Lee, H., Bang, H., and Li Jeon, N. (2015). QR-on-a-chip: Computer-recognizable micro-pattern engraved microfluidic device for high-throughput image acquisition. Lab on a Chip doi:10.1039%2FC5LC01350J.

Dudek, M., Gossan, N., Yang, N., Im, H.-J., Ruckshanthi, J.P.D., Yoshitane, H., Li, X., Jin, D., Wang, P., Boudiffa, M., et al. (2015). The chondrocyte clock gene Bmal1 controls cartilage homeostasis and integrity. J Clin Invest 126, 0–0 doi:10.1172%2FJCI82755.

Smith, A.J., and Verkman, A.S. (2015). Superresolution Imaging of Aquaporin-4 Cluster Size in Antibody-Stained Paraffin Brain Sections. Biophysical Journal 109, 2511–2522 doi:10.1016%2Fj.bpj.2015.10.047.

Lee, C., Roberts, S.E., and Gladfelter, A.S. Quantitative spatial analysis of transcripts in multinucleate cells using single-molecule FISH. Methods doi:10.1016%2Fj.ymeth.2015.12.007.

Handly, L.N., Pilko, A., and Wollman, R. (2015). Paracrine communication maximizes cellular response fidelity in wound signaling. eLife Sciences 4, e09652 doi:10.7554%2FeLife.09652.

Pattanayak, G.K., Lambert, G., Bernat, K., and Rust, M.J. (2015). Controlling the Cyanobacterial Clock by Synthetically Rewiring Metabolism. Cell Reports 13, 2362–2367 doi:10.1016%2Fj.celrep.2015.11.031.

Kath, J.E., Chang, S., Scotland, M.K., Wilbertz, J.H., Jergic, S., Dixon, N.E., Sutton, M.D., and Loparo, J.J. (2015). Exchange between Escherichia coli polymerases II and III on a processivity clamp. Nucl. Acids Res. gkv1375 doi:10.1093%2Fnar%2Fgkv1375.

Croft, W., Reusch, K., Tilunaite, A., Russell, N.A., Thul, R., and Bellamy, T.C. (2015). Probabilistic encoding of stimulus strength in astrocyte global calcium signals. Glia n/a – n/a doi:10.1002%2Fglia.22947.

Day, C.R., Chen, H., Coulon, A., Meier, J.L., and Larson, D.R. High-throughput single-molecule screen for small-molecule perturbation of splicing and transcription kinetics. Methods doi:10.1016%2Fj.ymeth.2015.11.025.

Stephen, T.-L., Higgs, N.F., Sheehan, D.F., Awabdh, S.A., López-Doménech, G., Arancibia-Carcamo, I.L., and Kittler, J.T. (2015). Miro1 Regulates Activity-Driven Positioning of Mitochondria within Astrocytic Processes Apposed to Synapses to Regulate Intracellular Calcium Signaling. J. Neurosci. 35, 15996–16011 doi:10.1523%2FJNEUROSCI.2068-15.2015.

Gu, X., Li, A., Liu, S., Lin, L., Xu, S., Zhang, P., Li, S., Li, X., Tian, B., Zhu, X., et al. (2015). MicroRNA124 Regulated Neurite Elongation by Targeting OSBP. Mol Neurobiol 1–9 doi:10.1007%2Fs12035-015-9540-4.

Zhao, Z., Yang, Y., Zeng, Y., and He, M. (2016). A microfluidic ExoSearch chip for multiplexed exosome detection towards blood-based ovarian cancer diagnosis. Lab on a Chip doi:10.1039%2FC5LC01117E.

Smith, G.B., Whitney, D.E., and Fitzpatrick, D. (2015). Modular Representation of Luminance Polarity in the Superficial Layers of Primary Visual Cortex. Neuron 88, 805–818 doi:10.1016%2Fj.neuron.2015.10.019.

Splitt, S.D., and Risser, D.D. (2015). The non-metabolizable sucrose analog sucralose is a potent inhibitor of hormogonium differentiation in the filamentous cyanobacterium Nostoc punctiforme. Arch Microbiol 1–11 doi:10.1007%2Fs00203-015-1171-7.

Lanier, M.H., McConnell, P., and Cooper, J.A. (2015). Cell Migration and Invadopodia Formation Require a Membrane-binding Domain of CARMIL2. J. Biol. Chem. jbc.M115.676882 doi:10.1074%2Fjbc.M115.676882.

Smith, G.B., Whitney, D.E., and Fitzpatrick, D. (2015). Modular Representation of Luminance Polarity in the Superficial Layers of Primary Visual Cortex. Neuron 88, 805–818 doi:10.1016%2Fj.neuron.2015.10.019.

Shigeto, M., Ramracheya, R., Tarasov, A.I., Cha, C.Y., Chibalina, M.V., Hastoy, B., Philippaert, K., Reinbothe, T., Rorsman, N., Salehi, A., et al. (2015). GLP-1 stimulates insulin secretion by PKC-dependent TRPM4 and TRPM5 activation. J Clin Invest 125, 4714–4728 doi:10.1172%2FJCI81975.

Shekhar, S., Kerleau, M., Kühn, S., Pernier, J., Romet-Lemonne, G., Jégou, A., and Carlier, M.-F. (2015). Formin and capping protein together embrace the actin filament in a menage a trois. Nat Commun 6, 8730 doi:10.1038%2Fncomms9730.

Ripple, D.C., and Hu, Z. (2015). Correcting the Relative Bias of Light Obscuration and Flow Imaging Particle Counters. Pharm Res 1–20 doi:10.1007%2Fs11095-015-1817-9.

Rost, B.R., Schneider, F., Grauel, M.K., Wozny, C., Bentz, C.G., Blessing, A., Rosenmund, T., Jentsch, T.J., Schmitz, D., Hegemann, P., et al. (2015). Optogenetic acidification of synaptic vesicles and lysosomes. Nat Neurosci 18, 1845–1852 doi:10.1038%2Fnn.4161.

Hersey, J.S., Meller, A., and Grinstaff, M.W. (2015). Functionalized Nanofiber Meshes Enhance Immunosorbent Assays. Anal. Chem. 87, 11863–11870 doi:10.1021%2Facs.analchem.5b03386.

Nosrati, R., Driouchi, A., Yip, C.M., and Sinton, D. (2015). Two-dimensional slither swimming of sperm within a micrometre of a surface. Nat Commun 6, 8703 doi:10.1038%2Fncomms9703.

Hoera, C., Skadell, M.M., Pfeiffer, S.A., Pahl, M., Shu, Z., Beckert, E., and Belder, D. (2016). A chip-integrated highly variable thermal flow rate sensor. Sensors and Actuators B: Chemical 225, 42–49 doi:10.1016%2Fj.snb.2015.11.009.

Huang, H., Alvarez, S., Bindbeutel, R.K., Shen, Z., Naldrett, M.J., Evans, B.S., Briggs, S.P., Hicks, L.M., Kay, S.A., and Nusinow, D.A. (2015). Identification of evening complex associated proteins in Arabidopsis by affinity purification and mass spectrometry. Mol Cell Proteomics mcp.M115.054064 doi:10.1074%2Fmcp.M115.054064.

Lenstra, T.L., Coulon, A., Chow, C.C., and Larson, D.R. (2015). Single-Molecule Imaging Reveals a Switch between Spurious and Functional ncRNA Transcription. Molecular Cell 60, 597–610 doi:10.1016%2Fj.molcel.2015.09.028.

Krieger, J.W., Singh, A.P., Bag, N., Garbe, C.S., Saunders, T.E., Langowski, J., and Wohland, T. (2015). Imaging fluorescence (cross-) correlation spectroscopy in live cells and organisms. Nat. Protocols 10, 1948–1974 doi:10.1038%2Fnprot.2015.100.

Acerbi, I., Cassereau, L., Dean, I., Shi, Q., Au, A., Park, C., Chen, Y.Y., Liphardt, J., Hwang, E.S., and Weaver, V.M. (2015). Human breast cancer invasion and aggression correlates with ECM stiffening and immune cell infiltration. Integr. Biol. 7, 1120–1134 doi:10.1039%2FC5IB00040H.

Romsey, N.R., Hou, Y., Rodriguez, L.L., and Schneider, I.C. (2013). The Number of Lines a Cell Contacts and Cell Contractility Drive the Efficiency of Contact Guidance. Cel. Mol. Bioeng. 7, 122–135 doi:10.1007%2Fs12195-013-0299-2.

Prevo, B., Mangeol, P., Oswald, F., Scholey, J.M., and Peterman, E.J.G. (2015). Functional differentiation of cooperating kinesin-2 motors orchestrates cargo import and transport in C. elegans cilia. Nat Cell Biol 17, 1536–1545 doi:10.1038%2Fncb3263.

Treweek, J.B., Chan, K.Y., Flytzanis, N.C., Yang, B., Deverman, B.E., Greenbaum, A., Lignell, A., Xiao, C., Cai, L., Ladinsky, M.S., et al. (2015). Whole-body tissue stabilization and selective extractions via tissue-hydrogel hybrids for high-resolution intact circuit mapping and phenotyping. Nat. Protocols 10, 1860–1896 doi:10.1038%2Fnprot.2015.122.

Jönsson, P., and Jönsson, B. (2015). Hydrodynamic Forces on Macromolecules Protruding from Lipid Bilayers Due to External Liquid Flows. Langmuir 31, 12708–12718 doi:10.1021/acs.langmuir.5b03421.

Wilson, C., Saunter, C.D., Girkin, J.M., and McCarron, J.G. (2015). Pressure-dependent regulation of Ca2+ signalling in the vascular endothelium. J Physiol 593, 5231–5253 doi:10.1113%2FJP271157.

Jeppesen, J.C., Solovyeva, V., Brewer, J.R., Johannes, L., Hansen, P.L., and Simonsen, A.C. (2015). Slow Relaxation of Shape and Orientational Texture in Membrane Gel Domains. Langmuir 31, 12699–12707 doi:10.1021%2Facs.langmuir.5b03168.

M. Jackson, J., B. Taylor, J., A. Witek, M., A. Hunsucker, S., P. Waugh, J., Fedoriw, Y., C. Shea, T., A. Soper, S., and M. Armistead, P. (2016). Microfluidics for the detection of minimal residual disease in acute myeloid leukemia patients using circulating leukemic cells selected from blood. Analyst. doi:10.1039%2FC5AN01836F.

Gualda, E.J., Pereira, H., Vale, T., Estrada, M.F., Brito, C., and Moreno, N. (2015). SPIM-fluid: open source light-sheet based platform for high-throughput imaging. Biomed. Opt. Express, BOE 6, 4447–4456 doi:10.1364%2FBOE.6.004447.

Schmohl, K.A., Müller, A.M., Wechselberger, A., Rühland, S., Salb, N., Schwenk, N., Heuer, H., Carlsen, J., Göke, B., Nelson, P.J., et al. (2015). Thyroid hormones and tetrac: new regulators of tumour stroma formation via integrin αvβ3. Endocr Relat Cancer 22, 941–952 doi:10.1530%2FERC-15-0245.

Cazaux, S., Sadoun, A., Biarnes-Pelicot, M., Martinez, M., Obeid, S., Bongrand, P., Limozin, L., and Puech, P.-H. (2016). Synchronizing atomic force microscopy force mode and fluorescence microscopy in real time for immune cell stimulation and activation studies. Ultramicroscopy 160, 168–181 doi:10.1016%2Fj.ultramic.2015.10.014.

Stauffer, B., and Powers, T. (2015). Target of rapamycin signaling mediates vacuolar fission caused by endoplasmic reticulum stress in S. cerevisiae. Mol. Biol. Cell mbc.E15–06 – 0344 doi:10.1091%2Fmbc.E15-06-0344.

Hankins, H.M., Sere, Y.Y., Diab, N.S., Menon, A.K., and Graham, T.R. (2015). Phosphatidylserine translocation at the yeast trans-Golgi network regulates protein sorting into exocytic vesicles. Mol. Biol. Cell mbc.E15–07 – 0487 doi:10.1091%2Fmbc.E15-07-0487.

Yu, Y.H., Narayanan, G., Sankaran, S., Ramasamy, S., Chan, S.Y., Lin, S., Chen, J., Yang, H., Srivats, H., and Ahmed, S. (2015). Purification, Visualization, and Molecular Signature of Neural Stem Cells. Stem Cells and Development doi:10.1089%2Fscd.2015.0190.

Bajcsy, P., Cardone, A., Chalfoun, J., Halter, M., Juba, D., Kociolek, M., Majurski, M., Peskin, A., Simon, C., Simon, M., et al. (2015). Survey statistics of automated segmentations applied to optical imaging of mammalian cells. BMC Bioinformatics 16, 330 doi:10.1186%2Fs12859-015-0762-2.

Desmarais, S.M., Tropini, C., Miguel, A., Cava, F., Monds, R.D., Pedro, M.A. de, and Huang, K.C. (2015). High-throughput, Highly Sensitive Analyses of Bacterial Morphogenesis Using Ultra Performance Liquid Chromatography. J. Biol. Chem. jbc.M115.661660 doi:10.1074%2Fjbc.M115.661660.

Marquardt, L.M., Ee, X., Iyer, N., Hunter, D., Mackinnon, S.E., Wood, M.D., and Sakiyama-Elbert, S.E. (2015). Finely Tuned Temporal and Spatial Delivery of GDNF Promotes Enhanced Nerve Regeneration in a Long Nerve Defect Model. Tissue Engineering Part A 21, 2852–2864 doi:10.1089%2Ften.tea.2015.0311 .

Lanier, M.H., Kim, T., and Cooper, J.A. (2015). CARMIL2 is a Novel Molecular Connection between Vimentin and Actin Essential for Cell Migration and Invadopodia Formation. Mol. Biol. Cell mbc.E15–08 – 0552 doi:10.1091%2Fmbc.E15-08-0552.

Lin, Y., Sohn, C.H., Dalal, C.K., Cai, L., and Elowitz, M.B. (2015). Combinatorial gene regulation by modulation of relative pulse timing. Nature 527, 54–58 doi:10.1038%2Fnature15710.

Devraj, K., Poznanovic, S., Spahn, C., Schwall, G., Harter, P.N., Mittelbronn, M., Antoniello, K., Paganetti, P., Muhs, A., Heilemann, M., et al. (2015). BACE-1 is expressed in the blood–brain barrier endothelium and is upregulated in a murine model of Alzheimer’s disease. J Cereb Blood Flow Metab 0271678X15606463 doi:10.1177%2F0271678X15606463.

Feutlinske, F., Browarski, M., Ku, M.-C., Trnka, P., Waiczies, S., Niendorf, T., Stallcup, W.B., Glass, R., Krause, E., and Maritzen, T. (2015). Stonin1 mediates endocytosis of the proteoglycan NG2 and regulates focal adhesion dynamics and cell motility. Nat Commun 6, 8535 doi:10.1038%2Fncomms9535.

Geyer, E.A., Burns, A., Lalonde, B.A., Ye, X., Piedra, F.-A., Huffaker, T.C., and Rice, L.M. (2015). A mutation uncouples the tubulin conformational and GTPase cycles, revealing allosteric control of microtubule dynamics. eLife Sciences e10113 doi:10.7554%2FeLife.10113.

Bosse, J.B., Hogue, I.B., Feric, M., Thiberge, S.Y., Sodeik, B., Brangwynne, C.P., and Enquist, L.W. (2015). Remodeling nuclear architecture allows efficient transport of herpesvirus capsids by diffusion. PNAS 112, E5725–E5733 doi:10.1073%2Fpnas.1513876112.

T. Brown, A., D. Vladescu, I., Dawson, A., Vissers, T., Schwarz-Linek, J., S. Lintuvuori, J., and K. Poon, W.C. (2016). Swimming in a crystal. Soft Matter 12, 131–140 doi:10.1039%2FC5SM01831E.

Bosse, J.B., Hogue, I.B., Feric, M., Thiberge, S.Y., Sodeik, B., Brangwynne, C.P., and Enquist, L.W. (2015). Remodeling nuclear architecture allows efficient transport of herpesvirus capsids by diffusion. PNAS 112, E5725–E5733 doi:10.1073%2Fpnas.1513876112.

Liu, X., Qu, X., Jiang, Y., Chang, M., Zhang, R., Wu, Y., Fu, Y., and Huang, S. (2015). Profilin Regulates Apical Actin Polymerization to Control Polarized Pollen Tube Growth. Molecular Plant 8, 1694–1709 doi:10.1016%2Fj.molp.2015.09.013.

Puah, W.C., and Wasser, M. Live imaging of muscles in Drosophila metamorphosis: Towards high-throughput gene identification and function analysis. Methods doi:10.1016/j.ymeth.2015.09.028.

Hadad, U., Thauland, T.J., Martinez, O.M., Butte, M.J., Porgador, A., and Krams, S.M. (2015). NKp46 clusters at the immune synapse and regulates NK cell polarization. Front. Immunol. 495 doi:10.3389%2Ffimmu.2015.00495.

Berenguer, J.R., Pichel, J.G., Giménez, N., Lalinde, E., Moreno, M.T., and Piñeiro-Hermida, S. (2015). Luminescent pentafluorophenyl-cycloplatinated complexes: synthesis, characterization, photophysics, cytotoxicity and cellular imaging. Dalton Trans. 44, 18839–18855 doi:10.1039%2FC5DT02721G.

Jonas, R., Klusch, A., Schmelz, M., Petersen, M., and Carr, R.W. (2015). Assessment of TTX-s and TTX-r Action Potential Conduction along Neurites of NGF and GDNF Cultured Porcine DRG Somata. PLoS ONE 10, e0139107 doi:10.1371%2Fjournal.pone.0139107.

Zou, W., Yadav, S., DeVault, L., Jan, Y.N., and Sherwood, D.R. (2015). RAB-10-Dependent Membrane Transport Is Required for Dendrite Arborization. PLoS Genet 11, e1005484 doi:10.1371%2Fjournal.pgen.1005484.

Gimber, N., Tadeus, G., Maritzen, T., Schmoranzer, J., and Haucke, V. (2015). Diffusional spread and confinement of newly exocytosed synaptic vesicle proteins. Nat Commun 6, 8392 doi:10.1038%2Fncomms9392.

Snijders, T., Smeets, J.S.J., van Kranenburg, J., Kies, A.K., van Loon, L.J.C., and Verdijk, L.B. (2015). Changes in myonuclear domain size do not precede muscle hypertrophy during prolonged resistance-type exercise training. Acta Physiol n/a – n/a doi:10.1111%2Fapha.12609.

Walck-Shannon, E., Reiner, D., and Hardin, J. (2015). Polarized Rac-dependent protrusions drive epithelial intercalation in the embryonic epidermis of C. elegans. Development dev.127597 doi:10.1242%2Fdev.127597.

Lukacs, V., Mathur, J., Mao, R., Bayrak-Toydemir, P., Procter, M., Cahalan, S.M., Kim, H.J., Bandell, M., Longo, N., Day, R.W., et al. (2015). Impaired PIEZO1 function in patients with a novel autosomal recessive congenital lymphatic dysplasia. Nat Commun 6, 8329 doi:10.1038%2Fncomms9329.

Mary, H., Fouchard, J., Gay, G., Reyes, C., Gauthier, T., Gruget, C., Pécréaux, J., Tournier, S., and Gachet, Y. (2015). Fission yeast kinesin-8 controls chromosome congression independently of oscillations. J Cell Sci 128, 3720–3730 doi:10.1242%2Fjcs.160465.

Martínez, L.E., Hardcastle, J.M., Wang, J., Pincus, Z., Tsang, J., Hoover, T.R., Bansil, R., and Salama, N.R. (2016). Helicobacter pylori strains vary cell shape and flagellum number to maintain robust motility in viscous environments. Molecular Microbiology 99, 88–110 doi:10.1111%2Fmmi.13218.

Paul, N.R., Allen, J.L., Chapman, A., Morlan-Mairal, M., Zindy, E., Jacquemet, G., Ama, L.F. del, Ferizovic, N., Green, D.M., Howe, J.D., et al. (2015). α5β1 integrin recycling promotes Arp2/3-independent cancer cell invasion via the formin FHOD3. J Cell Biol 210, 1013–1031 doi:10.1083%2Fjcb.201502040.

Bhattacharjee, S. (2015). Emerging trend of advanced image analysis in nanomedicine. Nanomedicine 10, 2801–2804 doi:10.2217%2Fnnm.15.121.

Wendykier, P., Borucki, B., and Nowinski, K.S. (2015). Large Java arrays and their applications. In 2015 International Conference on High Performance Computing Simulation (HPCS), pp. 460–467 doi:10.1109%2FHPCSim.2015.7237077.

Lloyd, D.P., and Allen, R.J. (2015). Competition for space during bacterial colonization of a surface. Journal of The Royal Society Interface 12, 20150608 doi:10.1098%2Frsif.2015.0608.

Windschüttl, S., Nettersheim, D., Schlatt, S., Huber, A., Welter, H., Schwarzer, J.U., Köhn, F.M., Schorle, H., and Mayerhofer, A. (2014). Are testicular mast cells involved in the regulation of germ cells in man? Andrology 2, 615–622 doi:10.1111%2Fj.2047-2927.2014.00227.x .

Ingaramo, M., York, A.G., Andrade, E.J., Rainey, K., and Patterson, G.H. (2015). Two-photon-like microscopy with orders-of-magnitude lower illumination intensity via two-step fluorescence. Nat Commun 6, 8184 doi:10.1038%2Fncomms9184.

Watanabe, T., Kakeno, M., Matsui, T., Sugiyama, I., Arimura, N., Matsuzawa, K., Shirahige, A., Ishidate, F., Nishioka, T., Taya, S., et al. (2015). TTBK2 with EB1/3 regulates microtubule dynamics in migrating cells through KIF2A phosphorylation. J Cell Biol 210, 737–751 doi:10.1083%2Fjcb.201412075.

Uchida, A., Monsma, P.C., Fenn, J.D., and Brown, A. Live-cell imaging of neurofilament transport in cultured neurons. B.-M. in C. Biology, ed. (Academic Press), link.

Grant, M.P., Cavanaugh, A., and Breitwieser, G.E. (2015). 14-3-3 Proteins Buffer Intracellular Calcium Sensing Receptors to Constrain Signaling. PLoS ONE 10, e0136702 doi:10.1371%2Fjournal.pone.0136702.

Nirschl, J.J., and Holzbaur, E.L.F. Live-cell imaging of retrograde transport initiation in primary neurons. B.-M. in C. Biology, ed. (Academic Press), link.

Pajović, J.D., Dojčilović, R., Božanić, D.K., Kaščáková, S., Réfrégiers, M., Dimitrijević-Branković, S., Vodnik, V.V., Milosavljević, A.R., Piscopiello, E., Luyt, A.S., et al. (2015). Tryptophan-functionalized gold nanoparticles for deep UV imaging of microbial cells. Colloids and Surfaces B: Biointerfaces 135, 742–750 doi:10.1016%2Fj.colsurfb.2015.08.050.

Wabnig, S., Liewald, J.F., Yu, S., and Gottschalk, A. (2015). High-Throughput All-Optical Analysis of Synaptic Transmission and Synaptic Vesicle Recycling in Caenorhabditis elegans. PLoS ONE 10, e0135584 doi:journal.pone.0135584.

Chazeau, A., Katrukha, E.A., Hoogenraad, C.C., and Kapitein, L.C. Studying neuronal microtubule organization and microtubule-associated proteins using single molecule localization microscopy. B.-M. in C. Biology, ed. (Academic Press),link.

Khayatan, B., Meeks, J.C., and Risser, D.D. (2015). Evidence that a modified type IV pilus-like system powers gliding motility and polysaccharide secretion in filamentous cyanobacteria. Molecular Microbiology 98, 1021–1036 doi:10.1111%2Fmmi.13205.

Ellefsen, K.L., Dynes, J.L., and Parker, I. (2015). Spinning-Spot Shadowless TIRF Microscopy. PLoS ONE 10, e0136055 doi:10.1371%2Fjournal.pone.0136055.

Dietrich, M.G., Zuellig, R.A., Spinas, G.A., Lehmann, R., Tschopp, O., and Niessen, M. (2015). Specific and redundant roles of PKBα/AKT1 and PKBβ/AKT2 in human pancreatic islets. Experimental Cell Research 338, 82–88 doi:10.1016%2Fj.yexcr.2015.08.008.

Adames, N.R., Schuck, P.L., Chen, K.C., Murali, T.M., Tyson, J.J., and Peccoud, J. (2015). Experimental testing of a new integrated model of the budding yeast START transition. Mol. Biol. Cell doi:mbc.E15–06 – 0358.

Reubold, T.F., K. Faelber, N. Plattner, Y. Posor, K. Ketel, U. Curth, J. Schlegel, R. Anand, D.J. Manstein, F. Noé, V. Haucke, O. Daumke, and S. Eschenburg. 2015. Crystal structure of the dynamin tetramer. Nature. doi:10.1038/nature14880.

Tanenbaum, M.E., N. Stern-Ginossar, J.S. Weissman, and R.D. Vale. 2015. Regulation of mRNA translation during mitosis. eLife. 4. doi:10.7554/eLife.07957.

Hansen, S.D., and R.D. Mullins. 2015. Lamellipodin promotes actin assembly by clustering Ena/VASP proteins and tethering them to actin filaments. eLife Sciences. 4:e06585. doi:10.7554/eLife.06585.

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Lansky, Z., M. Braun, A. Lüdecke, M. Schlierf, P.R. ten Wolde, M.E. Janson, and S. Diez. Diffusible Crosslinkers Generate Directed Forces in Microtubule Networks. Cell. doi:10.1016/j.cell.2015.01.051.

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Zhu, J., L. Liang, Y. Jiao, L. Liu, and on behalf of the U.S.-China Physical Sciences-Oncology Alliance. 2015. Enhanced Invasion of Metastatic Cancer Cells via Extracellular Matrix Interface. PLoS ONE. 10:e0118058. doi:10.1371/journal.pone.0118058.

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Cadra, S., A. Gucciardi, M.-P. Valignat, O. Theodoly, A. Vacaflores, J.C.D. Houtman, and A.C. Lellouch. ROZA-XL, an improved FRET based biosensor with an increased dynamic range for visualizing Zeta Associated Protein 70 kD (ZAP-70) tyrosine kinase activity in live T cells. Biochemical and Biophysical Research Communications. doi:10.1016/j.bbrc.2015.02.117.

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Chen, Y., Y.-C. Lin, T.-W. Kuo, and Z.A. Knight. 2015. Sensory Detection of Food Rapidly Modulates Arcuate Feeding Circuits. Cell. 160:829–841. doi:10.1016/j.cell.2015.01.033.

Garg, V., T.G. Taylor, M. Warren, P.W. Venable, K.J. Sciuto, J. Shibayama, and A.V. Zaitsev. 2015. β-Adrenergic Stimulation and Rapid Pacing Mutually Promote Heterogeneous Electrical Failure and Ventricular Fibrillation in the Globally Ischemic Heart. American Journal of Physiology - Heart and Circulatory Physiology. ajpheart.00768.2014. doi:10.1152/ajpheart.00768.2014.

Tourbillon, C., F. Miomandre, J.F. Audibert, M. Lepeltier, P. Martin, and J.C. Lacroix. Dual electrochemical modulation of reflectivity and luminescence on plasmonic gratings investigated by fluorescence microscopy coupled to electrochemistry. Electrochimica Acta. doi:10.1016/j.electacta.2015.02.141.

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Gupta, G., P. Nowak-Sliwinska, N. Herrero, P.J. Dyson, and B. Therrien. Increasing the selectivity of biologically active tetranuclear arene ruthenium assemblies. Journal of Organometallic Chemistry. doi:10.1016/j.jorganchem.2015.02.004.

Kim, J.H., Y. Ren, W.P. Ng, S. Li, S. Son, Y.-S. Kee, S. Zhang, G. Zhang, D.A. Fletcher, D.N. Robinson, and E.H. Chen. Mechanical Tension Drives Cell Membrane Fusion. Developmental Cell. doi:10.1016/j.devcel.2015.01.005.

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Ding, G., W. Zou, H. Zhang, Y. Xue, Y. Cai, G. Huang, L. Chen, S. Duan, and L. Kang. 2015. In Vivo Tactile Stimulation-Evoked Responses in Caenorhabditis elegans Amphid Sheath Glia. PLoS ONE. 10:e0117114. doi:10.1371/journal.pone.0117114.

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Reinhart, W.F., J.G. Reifenberger, D. Gupta, A. Muralidhar, J. Sheats, H. Cao, and K.D. Dorfman. 2015. Distribution of distances between DNA barcode labels in nanochannels close to the persistence length. The Journal of Chemical Physics. 142:064902. doi:10.1063/1.4907552.

Breslin, J.W., X.E. Zhang, R.A. Worthylake, and F.M. Souza-Smith. 2015. Involvement of Local Lamellipodia in Endothelial Barrier Function. PLoS ONE. 10:e0117970. doi:10.1371/journal.pone.0117970.

Nicholas, M.P., P. Höök, S. Brenner, C.L. Wynne, R.B. Vallee, and A. Gennerich. 2015. Control of cytoplasmic dynein force production and processivity by its C-terminal domain. Nat Commun. 6. doi:10.1038/ncomms7206.

Liang, X., D.S.K. Samways, K. Wolf, E.A. Bowles, J.P. Richards, J. Bruno, S. Dutertre, R.J. DiPaolo, and T.M. Egan. 2015. Quantifying Ca2+ Current and Permeability in ATP-gated P2X7 Receptors. J. Biol. Chem. jbc.M114.627810. doi:10.1074/jbc.M114.627810.

Roelants, F.M., B.M. Su, J. von Wulffen, S. Ramachandran, E. Sartorel, A.E. Trott, and J. Thorner. 2015. Protein kinase Gin4 negatively regulates flippase function and controls plasma membrane asymmetry. J Cell Biol. 208:299–311. doi:10.1083/jcb.201410076.

Beekharry, C.C., G.Z. Zhu, and N.S. Magoski. Role for electrical synapses in shaping the output of coupled peptidergic neurons from Lymnaea. Brain Research. doi:10.1016/j.brainres.2015.01.039.

Cao, W.S., J.C. Livesey, and R.F. Halliwell. 2015. An evaluation of a human stem cell line to identify risk of developmental neurotoxicity with antiepileptic drugs. Toxicology in Vitro. 29:592–599. doi:10.1016/j.tiv.2015.01.010.

Eicher, D., N. Ramanathan, and C.A. Merten. 2015. Soft compartmentalization: Combining droplet-based microfluidics with freely accessible cells. Eng. Life Sci. n/a–n/a. doi:10.1002/elsc.201400184.

Ding, Y., J. Li, J.R. Enterina, Y. Shen, I. Zhang, P.H. Tewson, G.C.H. Mo, J. Zhang, A.M. Quinn, T.E. Hughes, D. Maysinger, S.C. Alford, Y. Zhang, and R.E. Campbell. 2015. Ratiometric biosensors based on dimerization-dependent fluorescent protein exchange. Nat Meth. 12:195–198. doi:10.1038/nmeth.3261.

Wang, X., J. Liu, Z. Zhu, and G. Ou. The heparan sulfate-modifying enzyme glucuronyl C5-epimerase HSE-5 controls Caenorhabditis elegans Q neuroblast polarization during migration. Developmental Biology. doi:10.1016/j.ydbio.2015.01.007.

Sgro, A.E., D.J. Schwab, J. Noorbakhsh, T. Mestler, P. Mehta, and T. Gregor. 2015. From intracellular signaling to population oscillations: bridging size‐ and time‐scales in collective behavior. Molecular Systems Biology. 11:779. doi:10.15252/msb.20145352.

Nakai, Y., M. Ozeki, T. Hiraiwa, R. Tanimoto, A. Funahashi, N. Hiroi, A. Taniguchi, S. Nonaka, V. Boilot, R. Shrestha, J. Clark, N. Tamura, V.M. Draviam, and H. Oku. 2015. High-speed microscopy with an electrically tunable lens to image the dynamics of in vivo molecular complexes. Review of Scientific Instruments. 86:013707. doi:10.1063/1.4905330.

Miki, T., M. Nishina, and G. Goshima. 2015. RNAi screening identifies the armadillo repeat-containing kinesins responsible for microtubule-dependent nuclear positioning in Physcomitrella patens. Plant Cell Physiol. pcv002. doi:10.1093/pcp/pcv002.

Toro, C.A., S. Eger, L. Veliz, P. Sotelo-Hitschfeld, D. Cabezas, M.A. Castro, K. Zimmermann, and S. Brauchi. 2015. Agonist-Dependent Modulation of Cell Surface Expression of the Cold Receptor TRPM8. J. Neurosci. 35:571–582. doi:10.1523/JNEUROSCI.3820-13.2015.

Charier, D., O. Beauchet, M. Bell, B. Brugg, R. Bartha, and C. Annweiler. 2015. Memantine Plus Vitamin D Prevents Axonal Degeneration Caused by Lysed Blood. ACS Chem Neurosci. doi:10.1021/cn500303k.

Rohn, J.L., J.V. Patel, B. Neumann, J. Bulkescher, N. Mchedlishvili, R.C. McMullan, O.A. Quintero, J. Ellenberg, and B. Baum. 2014. Myo19 Ensures Symmetric Partitioning of Mitochondria and Coupling of Mitochondrial Segregation to Cell Division. Curr Biol. 24:2598–2605. doi:10.1016/j.cub.2014.09.045.

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Crick, A.J., E. Cammarota, K. Moulang, J. Kotar, and P. Cicuta. 2015. Chapter 26 - Advances in single-cell experimental design made possible by automated imaging platforms with feedback through segmentation. In Methods in Cell Biology. E.K. Paluch, editor. Academic Press. 471–488.

Foust, A.J., V. Zampini, D. Tanese, E. Papagiakoumou, and V. Emiliani. 2015. Computer-generated holography enhances voltage dye fluorescence discrimination in adjacent neuronal structures. Neurophoton. 2:021007–021007. doi:10.1117/1.NPh.2.2.021007.

Pereira, P.M., P. Almada, and R. Henriques. 2015. Chapter 7 - High-content 3D multicolor super-resolution localization microscopy. In Methods in Cell Biology. E.K. Paluch, editor. Academic Press. 95–117.

Das, S., T. Yin, Q. Yang, J. Zhang, Y.I. Wu, and J. Yu. 2015. Single-molecule tracking of small GTPase Rac1 uncovers spatial regulation of membrane translocation and mechanism for polarized signaling. PNAS. 112:E267–E276. doi:10.1073/pnas.1409667112.


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2014

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Xiaojie Wei, Songbin He, Zhouguang Wang, Jiamin Wu, Jinjing Zhang, Yi Cheng, Jie Yang, Xinlong Xu, Zaifeng Chen, Junmin Ye, Li Chen, Li Lin, Jian Xiao: Fibroblast growth factor 1 attenuates 6-hydroxydopamine-induced neurotoxicity: an in vitro and in vivo investigation in experimental models of parkinson’s disease. Am J Transl Res 2014;6(6):664-677. (Abstract AJTR0001987, Full text, PDF).

Weijuan Li, Yaoqi Chen, Songhai Li, Xiaopeng Guo, Wenping Zhou, Qiutang Zeng, Yuhua Liao, Yumiao Wei: Agonistic antibody to angiotensin II type 1 receptor accelerates atherosclerosis in ApoE-/- mice. Am J Transl Res 2014;6(6):678-690. (Abstract AJTR0002772, Full text, PDF).

Tingting Chen, Pei Zhang, Wenxia Fan, Fenghua Qian, Li Pei, Shuangnian Xu, Zhongmin Zou, Bing Ni, Yong Zhang: Co-transplantation with mesenchymal stem cells expressing a SDF-1/HOXB4 fusion protein markedly improves hematopoietic stem cell engraftment and hematogenesis in irradiated mice. Am J Transl Res 2014;6(6):691-702.

Jing-Juan Huang,Yi-Qin Shi, Rui-Lin Li, An Hu, Hong-Sheng Zhou, Qian Cheng, Zheng Xu, Zhi-Ming Yang, Chang-Ning Hao, Jun-Li Duan: Angiogenesis effect of therapeutic ultrasound on ischemic hind limb in mice. Am J Transl Res 2014;6(6):703-713. (Abstract AJTR0002564, Full text, PDF).

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Paul W Burridge, Scott A Metzler, Karina H Nakayama, Oscar J Abilez, Chelsey S Simmons, Marc A Bruce, Yuka Matsuura, Paul Kim, Joseph C Wu, Manish Butte, Ngan F Huang, Phillip C Yang: Multi-cellular interactions sustain long-term contractility of human pluripotent stem cell-derived cardiomyocytes. Am J Transl Res 2014;6(6):724-735. (Abstract AJTR0002357, Full text, PDF).

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Peter Pitrone, Johannes Schindelin, Luke Stuyvenberg, Stephan Preibisch, Michael Weber, Kevin W. Eliceiri, Jan Huisken, Pavel Tomancak (2013). OpenSPIM - an open access platform for light sheet microscopy. arxiv.org/abs/1302.1987

van der Ploeg, R., Verheul, J., Vischer, N. O. E., Alexeeva, S., Hoogendoorn, E., Postma, M., Banzhaf, M., Vollmer, W. and den Blaauwen, T. (2013), Colocalization and interaction between elongasome and divisome during a preparative cell division phase in Escherichia coli. Molecular Microbiology. doi: 10.1111/mmi.12150

Bo-mi Song, Serge Faumont, Shawn Lockery, and Leon Avery (2013). Recognition of familiar food activates feeding via an endocrine serotonin signal in Caenorhabditis elegans. eLife 2013;2:e00329 doi:10.7554/eLife.00329

Oliver Tills, Tabitha Bitterli, Phil Culverhouse, John I Spicer and Simon Rundle (2013). A novel application of motion analysis for detecting stress responses in embryos at different stages of development. BMC Bioinformatics 14:37 doi:10.1186/1471-2105-14-37

Lee BH, Gauna AE, Perez G, Park Y-j, Pauley KM, et al. (2013) Autoantibodies against Muscarinic Type 3 Receptor in Sjögren's Syndrome Inhibit Aquaporin 5 Trafficking. PLoS ONE 8(1): e53113. doi:10.1371/journal.pone.0053113

Svetlana Glushakova, Vladimir Lizunov, Paul S Blank, Kamran Melikov, Glen Humphrey and Joshua Zimmerberg (2013). Cytoplasmic free Ca2+ is essential for multiple steps in malaria parasite egress from infected erythrocytes. Malaria Journal 12:41 doi:10.1186/1475-2875-12-41

Wu M, Piccini M, Koh C-Y, Lam KS, Singh AK (2013) Single Cell MicroRNA Analysis Using Microfluidic Flow Cytometry. PLoS ONE 8(1): e55044. doi:10.1371/journal.pone.0055044

Martin D. Bootman, Katja Rietdorf, Tony Collins, Simon Walker, and Michael Sanderson (2013). Ca2+-Sensitive Fluorescent Dyes and Intracellular Ca2+ Imaging. Cold Spring Harb Protoc doi:10.1101/pdb.top066050

Emad Moeendarbary, Léo Valon, Marco Fritzsche, Andrew R. Harris, Dale A. Moulding, Adrian J. Thrasher, Eleanor Stride, L. Mahadevan, and Guillaume T. Charras (2013). The cytoplasm of living cells behaves as a poroelastic material. Nature Materials doi:10.1038/nmat3517

Ullman G, Wallden M, Marklund EG, Mahmutovic A, Razinkov I, and Elf J. (2013) High-throughput gene expression analysis at the level of single proteins using a microfluidic turbidostat and automated cell tracking. Phil Trans R Soc B 368: 20120025. doi:10.1098/rstb.2012.0025

Lina Duan, Daniela Dietrich, Chong Han Ng, Penny Mei Yeen Chan, Rishikesh Bhalerao, Malcolm J. Bennett, and José R. Dinneny. (2013). Endodermal ABA Signaling Promotes Lateral Root Quiescence during Salt Stress in Arabidopsis Seedlings. Plant Cell tpc.112.107227; doi:10.1105/tpc.112.107227

Marie-Pierre Valignat, Olivier Theodoly, Alexia Gucciardi†, Nancy Hogg, Annemarie C. Lellouch (2013). T Lymphocytes Orient against the Direction of Fluid Flow during LFA-1-Mediated Migration. Biophysical J. 104:322–331. doi:10.1016/j.bpj.2012.12.007

Emily A. Oblath , W. Hampton Henley , Jean Pierre Alarie and J. Michael Ramsey (2013). A microfluidic chip integrating DNA extraction and real-time PCR for the detection of bacteria in saliva. Lab Chip, 2013, Advance Article doi: 10.1039/C3LC40961A

Knowlton AE, Fowler LJ, Patel RK, Wallet SM, Grieshaber SS (2013) Chlamydia Induces Anchorage Independence in 3T3 Cells and Detrimental Cytological Defects in an Infection Model. PLoS ONE 8(1): e54022. doi:10.1371/journal.pone.0054022

Zhicheng Long , Eileen Nugent , Avelino Javer , Pietro Cicuta , Bianca Sclavi , Marco Cosentino Lagomarsino and Kevin D. Dorfman (2013). Microfluidic chemostat for measuring single cell dynamics in bacteria. Lab Chip13, 947-954 doi: 10.1039/C2LC41196B

Burchfield, J. G., Lu, J., Fazakerley, D. J., Tan, S.-X., Ng, Y., Mele, K., Buckley, M. J., Han, W., Hughes, W. E. and James, D. E. (2013), Novel Systems for Dynamically Assessing Insulin Action in Live Cells Reveals Heterogeneity in the Insulin Response. Traffic, 14: 259–273. doi: 10.1111/tra.12035

Christopher M. Yip (2013). Correlative Optical and Scanning Probe Microscopies for Mapping Interactions at Membranes. Methods in Molecular Biology Volume 950, Part 4, 439-456, DOI: 10.1007/978-1-62703-137-0_24

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Evgenia Leikina, Kamran Melikov, Sarmistha Sanyal, Santosh K. Verma, Bokkee Eun, Claudia Gebert, Karl Pfeifer, Vladimir A. Lizunov, Michael M. Kozlov, and Leonid V. Chernomordik (2012). Extracellular annexins and dynamin are important for sequential steps in myoblast fusion. J Cell Biol 200:109-123. doi:10.1083/jcb.201207012

Sascha Just, Susann Illing, Michelle Trester-Zedlitz, Elaine K Lau, Sarah J Kototowski, Elke Miess, Anika Mann, Christian Doll, Jonathan C Trinidad, Alma L Burlingame, Mark von Zastrow, and Stefan Schulz (2012). Differentiation of Opioid Drug Effects by Hierarchical Multi-site Phosphorylation Mol Pharmacol mol.112.082875; published ahead of print December 13, 2012, doi:10.1124/mol.112.082875

Gabriela N. Bosio, Thomas Breitenbach, Julieta Parisi, Miguel Reigosa, Frances H. Blaikie, Brian W. Pedersen, Elsa F. F. Silva, Daniel O. Mártire, and Peter R. Ogilby (2012). Antioxidant β-Carotene Does Not Quench Singlet Oxygen in Mammalian Cells. Journal of the American Chemical Society doi: 10.1021/ja308930a

Ruben Mercadé-Prieto, Xuemiao Pan, Angel Fernández-González, Zhibing Zhang, and Serafim Bakalis (2012). Quantification of Microcapsules Deposited in Cotton Fabrics before and after Abrasion Using Fluorescence Microscopy. Industrial & Engineering Chemistry Research 51:16741-16749 doi: 10.1021/ie3023912

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Luisa Cochella, and Oliver Hobert (2012). Embryonic Priming of a miRNA Locus Predetermines Postmitotic Neuronal Left/Right Asymmetry in C. elegans. Cell 151:1229-1242 doi:10.1016/j.cell.2012.10.049

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Michael P. Grant, Ann Stepanchick, and Gerda E. Breitwieser (2012). Calcium Signaling Regulates Trafficking of Familial Hypocalciuric Hypercalcemia (FHH) Mutants of the Calcium Sensing Receptor Molecular Endocrinology me.2012-1232; doi:10.1210/me.2012-1232 [4]

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Robert J. Lee, Guoxiang Xiong, Jennifer M. Kofonow, Bei Chen, Anna Lysenko, Peihua Jiang, Valsamma Abraham, Laurel Doghramji, Nithin D. Adappa, James N. Palmer, David W. Kennedy, Gary K. Beauchamp, Paschalis-Thomas Doulias, Harry Ischiropoulos, James L. Kreindler, Danielle R. Reed, and Noam A. Cohen (2012). T2R38 taste receptor polymorphisms underlie susceptibility to upper respiratory infection. J Clin Invest. DOI:10.1172/JCI64240

Hyeran Kang, Michael J. Bradley, Brannon R. McCullough, Anaëlle Pierre, Elena E. Grintsevich, Emil Reisler, and Enrique M. De La Cruz (2012). Identification of cation-binding sites on actin that drive polymerization and modulate bending stiffness. PNAS DOI:10.1073/pnas.1211078109

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Sung Jae Kim, Sung Hee Ko, Rhokyun Kwak, Jonathan D. Posner, Kwan Hyoung Kang and Jongyoon Han (2012). Multi-Vortical Flow Inducing Electrokinetic Instability in Ion Concentration Polarization Layer. NanoScale DOI:10.1039/C2NR32467A

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Anindya Ghosh-Roy, Alexandr Goncharov, Yishi Jin, and Andrew D. Chisholm. (2012). Kinesin-13 and Tubulin Posttranslational Modifications Regulate Microtubule Growth in Axon Regeneration. Dev. Cell DOI:10.1016/j.devcel.2012.08.010

C.D. Rodríguez Flórez (2012). Occurrence of the Uto-Aztecan premolar trait in a contemporary Colombian Amerindian population. Journal of Comparative Human Biology DOI:10.1016/j.jchb.2012.07.001

Amy J Lam, François St-Pierre, Yiyang Gong, Jesse D Marshall, Paula J Cranfill, Michelle A Baird, Michael R McKeown, Jörg Wiedenmann, Michael W Davidson, Mark J Schnitzer, Roger Y Tsien & Michael Z Lin (2012). Improving FRET dynamic range with bright green and red fluorescent proteins. Nature Methods DOI:10.1038/nmeth.2171

Lauren M. Sassoubre, Kara L. Nelson, and Alexandria B. Boehm (2012). Photoinactivation mechanisms of Enterococcus faecalis in seawater. Applied Environmental Microbiology EM.02375-12 DOI:10.1128/AEM.02375-12

Stephanie Woo, Michael P. Housley, Orion D. Weiner, and Didier Y.R. Stainier (2012). Nodal signaling regulates endodermal cell motility and actin dynamics via Rac1 and Prex1. J. Cell Biol. 198: 941-952. DOI:10.1083/jcb.201203012

Julia U. Sprenger, Ruwan K. Perera, Konrad R. Götz, Viacheslav O. Nikolaev (2012). FRET Microscopy for Real-time Monitoring of Signaling Events in Live Cells Using Unimolecular Biosensors. J. Vis. Exp. (66), e4081, DOI: 10.3791/4081

Claudio Marcelo Fader, Milton Osmar Aguilera and María Isabel Colombo (2012). ATP is released from autophagic vesicles to the extracellular space in a VAMP7-dependent manner. Autophagy 8(12) no doi available

AD Mendelsohn, C Nyitray, M Sena, and TA Desai (2012). Size-controlled Insulin Secreting Cell Clusters. Acta Biomaterialia doi: 10.1016/j.actbio.2012.08.010

Serge Pelet, Reinhard Dechant, Sung Sik Lee, Frank van Drogen, and Matthias Peter (2012). An integrated image analysis platform to quantify signal transduction in single cells. Integr. Biol. Accepted Manuscript DOI: 10.1039/C2IB20139A

Enrico Fonda, Katepalli R. Sreenivasan, and Daniel P. Lathrop (2012). Liquid nitrogen in fluid dynamics: Visualization and velocimetry using frozen particles. Rev. Sci. Instrum. 83, 085101 doi: 10.1063/1.4739837

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Sung Hee Ko1, Yong-Ak Song, Sung Jae Kim, Myungji Kim, Jongyoon Han,and Kwan Hyoung Kang (2012). Nanofluidic Preconcentration Device in a Straight Microchannel Using Ion Concentration Polarization. Lab on a Chip DOI: 10.1039/c2lc21238b

Kelly A. O’Brien, T. Kent Gartner, Nissim Hay, and Xiaoping Du (2012). ADP-Stimulated Activation of Akt During Integrin Outside-In Signaling Promotes Platelet Spreading by Inhibiting Glycogen Synthase Kinase-3β. Arteriosclerosis, Thrombosis, and Vascular Biology DOI: 10.1161/​ATVBAHA.112.254680

G. Ullman, M. Wallden, E. G. Marklund, A. Mahmutovic, Ivan Razinkov, and J Elf (2012). Hi-throughput gene expression analysis at the level of single proteins using a microfluidic turbidostat and automated cell tracking. arXiv arXiv:1207.4048v1

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Kevin W Eliceiri, Michael R Berthold, Ilya G Goldberg, Luis Ibáñez, B S Manjunath, Maryann E Martone, Robert F Murphy, Hanchuan Peng, Anne L Plant, Badrinath Roysam, Nico Stuurman, Jason R Swedlow, Pavel Tomancak & Anne E Carpenter (2012). Biological imaging software tools. Nature Methods DOI: 10.1038/nmeth.2084

Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid, Jean-Yves Tinevez, Daniel James White, Volker Hartenstein, Kevin Eliceiri, Pavel Tomancak & Albert Cardona (2012). Fiji: an open-source platform for biological-image analysis. Nature Methods DOI: 10.1038/nmeth.2019

Vedakumar Tatavarty, Sulagna Das, and Ji Yu (2012). Polarization of actin cytoskeleton is reduced in dendritic protrusions during early spine development in hippocampal neuron. Molecular Biology of the Cell DOI: 10.1091/mbc.E12-02-0165

Petter Hammar, Prune Leroy, Anel Mahmutovic, Erik G. Marklund, Otto G. Berg, and Johan Elf (2012). The lac Repressor Displays Facilitated Diffusion in Living Cells. Science DOI: 10.1126/science.1221648

Henrique Borges da Silva, Susana S. Caetano, Isadora Monteiro, Iván Gómez-Conde, Kirsten Hanson, Carlos Penha-Gonçalves, David N. Olivieri, Maria M. Mota, Cláudio R. Marinho, Maria R. D’Imperio Lima, Carlos E. Tadokoro (2012). Early skin immunological disturbance after Plasmodium-infected mosquito bites. Cellular Immunology DOI: 10.1016/j.cellimm.2012.06.003

Andrea Rossi, Tobias J. Moritz, Julien Ratelade and A. S. Verkman (2012). Super-resolution imaging of aquaporin-4 orthogonal arrays of particles in cell membranes. Journal of Cell Science DOI: 10.1242/​jcs.109603

Qing Yang, Xiao-Feng Zhang, Thomas D. Pollard, and Paul Forscher (2012). Arp2/3 complex–dependent actin networks constrain myosin II function in driving retrograde actin flow. Journal of Cell Biology DOI: 10.1083/jcb.201111052

Kaščáková S, Maigre L, Chevalier J, Réfrégiers M, Pagès J-M (2012). Antibiotic Transport in Resistant Bacteria: Synchrotron UV Fluorescence Microscopy to Determine Antibiotic Accumulation with Single Cell Resolution. PLoS ONE DOI:10.1371/journal.pone.0038624

Heather M. Brown, Andrea E. Knowlton, Scott S. Grieshaber (2012). Chlamydial Infection Induces Host Cytokinesis Failure at Abscission. Cellular Microbiology DOI: 10.1111/j.1462-5822.2012.01820.x

Yun Li, Brittany D. Roy, Wei Wang, Li Zhang, Lifeng Zhang, Stephen B. Sampson, Yupeng Yang, and Da-Ting Lin (2012). Identification of Two Functionally Distinct Endosomal Recycling Pathways for Dopamine D2 Receptor. The Journal of Neuroscience DOI: 10.1523/​JNEUROSCI.0008-12.2012

Zenclussen AC, Olivieri DN, Dustin ML, Tadokoro CE (2012). In vivo multiphoton microscopy technique to reveal the physiology of the mouse placenta. American Journal of Reproductive Immunology DOI: 10.1111/j.1600-0897.2012.01161.x

Y. Imai, K. Itsuki, Y. Okamura, R. Inoue, and M. X. Mori (2012). A self-limiting regulation of vasoconstrictor-activated TRPC3/C6/C7 channels coupled to PI(4,5)P2-diacylglycerol signalling. The Journal of Physiology DOI: 10.1113/jphysiol.2011.221358

Yue Hou, Sarah Hedberg and Ian C Schneider (2012). Differences in adhesion and protrusion properties correlate with differences in migration speed under EGF stimulation. BMC Biophysics DOI: 10.1186/2046-1682-5-8

John M. Christie, Kenichi Hitomi, Andrew S. Arvai, Kimberly A. Hartfield, Marcel Mettlen, Ashley J. Pratt, John A. Tainer, and Elizabeth D. Getzoff (2012). Structural Tuning of the Fluorescent Protein iLOV for Improved Photostability. Journal of Biological Chemistry DOI: 10.1074/jbc.M111.318881

Vicente Sancenon, Sue-Ann Lee, Christina Patrick, Janice Griffith, Amy Paulino, Tiago F. Outeiro, Fulvio Reggiori, Eliezer Masliah, and Paul J. Muchowski (2012). Suppression of α-Synuclein Toxicity and Vesicle Trafficking Defects by Phosphorylation at S129 in Yeast Depends on Genetic Context. Human Molecular Genetics DOI: 10.1093/hmg/dds058

Rachel Barkan, Adam J. Zahand, Kfir Sharabi, Ayelet T. Lamm, Naomi Feinstein, Erin Haithcock, Katherine L. Wilson, Jun Liu, and Yosef Gruenbaum (2012). A Highlights from MBoC Selection: Ce-emerin and LEM-2: essential roles in Caenorhabditis elegans development, muscle function, and mitosis. Molecular Biology of The Cell DOI: 10.1091/mbc.E11-06-0505

Muhammad Nafees, Wasim Liaqut, Salamat Ali and Muhammad Ahsan Shafique (2012). Synthesis of ZnO/Al:ZnO nanomaterial: structural and band gap variation in ZnO nanomaterial by Al doping. Applied Nanoscience DOI:10.1007/s13204-012-0067-y

Diana Soares da Costa, Ricardo A. Pires, Ana M. Frias, Rui L. Reis and Iva Pashkuleva (2012). Sulfonic groups induce formation of filopodia in mesenchymal stem cells. Journal of Materials Chemistry DOI: 10.1039/C2JM15762D

C.-H. Huang, S. Sankaran, D. Racoceanu, S. Hariharan, S. Ahmed (2012). On-line 3-D Tracking of Suspension Living Cells Imaged with Phase-Contrast Microscopy. IEEE Transactions on Biomedical Engineering DOI: 10.1109/TBME.2012.2194487

Yuichi Wakamoto, Alexander Y. Grosberg, Edo Kussell (2012). OPTIMAL LINEAGE PRINCIPLE FOR AGE-STRUCTURED POPULATIONS. Evolution DOI: 10.1111/j.1558-5646.2011.01418.x

Sebastian Munck, Katarzyna Miskiewicz, Ragna Sannerud, Silvia A. Menchon, Liya Jose, Rainer Heintzmann, Patrik Verstreken and Wim Annaert (2012). Sub-diffraction imaging on standard microscopes through Photobleaching Microscopy with non-linear Processing. Journal of Cell Science DOI: 10.1242/​jcs.098939

S. J. Leavesley, N. Annamdevula, J. Boni, S. Stocker, K. Grant, B. Troyanovsky, T. C. Rich, and D. F. Alvarez (2012). Hyperspectral imaging microscopy for identification and quantitative analysis of fluorescently-labeled cells in highly autofluorescent tissue. Journal of Biophotonics DOI: 10.1002/jbio.201100066

Soudeh Ehsani, José Carlos Santos, Cristina D. Rodrigues, Ricardo Henriques, Laurent Audry, Christophe Zimmer, Philippe Sansonetti, Guy Tran Van Nhieu and Jost Enninga (2012). Hierarchies of host factor dynamics at the entry site of Shigella flexneri during host cell invasion. Infection and Immunity DOI: 10.1128/IAI.06391-11

Saumya Saurabh, Suvrajit Maji, and Marcel P. Bruchez (2012). "Evaluation of sCMOS cameras for detection and localization of single Cy5 molecules," Optics Express DOI: 10.1364/OE.20.007338

Benjamin E. Bammes, Ryan H. Rochat, Joanita Jakana, Dong-Hua Chen, Wah Chiu (2012). Direct electron detection yields cryo-EM reconstructions at resolutions beyond 3/4 Nyquist frequency. Journal of Structural Biology DOI: 10.1016/j.jsb.2012.01.008

Tuson, H. H., Auer, G. K., Renner, L. D., Hasebe, M., Tropini, C., Salick, M., Crone, W. C., Gopinathan, A., Huang, K. C. and Weibel, D. B. (2012). Measuring the stiffness of bacterial cells from growth rates in hydrogels of tunable elasticity. Molecular Microbiology DOI: 10.1111/j.1365-2958.2012.08063.x

Jonas Ries, Charlotte Kaplan, Evgenia Platonova, Hadi Eghlidi & Helge Ewers (2012). A simple, versatile method for GFP-based super-resolution microscopy via nanobodies. Nature Methods DOI: 10.1038/nmeth.1991

Subramanian Krishnan, G. Esteban Fernandez, David B. Sacks, Nemani V. Prasadarao (2012). IQGAP1 mediates the disruption of adherens junctions to promote Escherichia coli K1 invasion of brain endothelial cells. Cellular Microbiology DOI: 10.1111/j.1462-5822.2012.01805.x

R F Hennigan, C A Moon, L M Parysek, K R Monk, G Morfini, S Berth, S Brady and N Ratner (2012). The NF2 tumor suppressor regulates microtubule-based vesicle trafficking via a novel Rac, MLK and p38SAPK pathway. Oncogene DOI: 10.1038/onc.2012.135

Dirk Landgraf, Burak Okumus, Peter Chien, Tania A Baker and Johan Paulsson (2012). Segregation of molecules at cell division reveals native protein localization. Nature Methods DOI:10.1038/nmeth.1955

Moritz Lang, Fabian Rudolf, Jörg Stelling (2012). Use of YouScope to Implement Systematic Microscopy Protocols. Current Protocols in Molecular Biology DOI: 10.1002/0471142727.mb1421s98

Erich E. Hoover1, Jeffrey J. Field, David G. Winters, Michael D. Young, Eric V. Chandler, John C. Speirs, Jacob T. Lapenna, Susy M. Kim, Shi-you Ding, Randy A. Bartels, Jing W. Wang, and Jeff A. Squier1 (2012). Eliminating the scattering ambiguity in multifocal, multimodal, multiphoton imaging systems. Journal of Biophotonics DOI: 10.1002/jbio.201100139

Travis J. Crites, Lirong Chen, and Rajat Varma (2012). A TIRF Microscopy Technique for Real-time, Simultaneous Imaging of the TCR and its Associated Signaling Proteins. Journal of Visualized Experiments DOI: 10.3791/3892

Wei Li, Wei Zou, Yihong Yang, Yongping Chai, Baohui Chen, Shiya Cheng, Dong Tian, Xiaochen Wang, Ronald D. Vale, and Guangshuo Ou (2012). Autophagy genes function sequentially to promote apoptotic cell corpse degradation in the engulfing cell. Journal of Cell Biology DOI: 10.1083/jcb.201111053

Z. Schilling, E. Frank, V. Magidson, J. Wason, J. Loncarek, K. Boyer, J. Wen, and A. Khodjakov (2012). Predictive-focus illumination for reducing photodamage in live-cell microscopy. Journal of Microscopy DOI: 10.1111/j.1365-2818.2012.03605.x

Saumya Saurabh, Suvrajit Maji, and Marcel P. Bruchez (2012). Evaluation of sCMOS cameras for detection and localization of single Cy5 molecules. Optics Express DOI: 10.1364/OE.20.007338

Junyu Mai, Greg J. Sommer, and Anson V. Hatch (2012). Microfluidic Digital Isoelectric Fractionation for Rapid Multi-Dimensional Glycoprotein Analysis. Analytical Chemistry DOI: 10.1021/ac203076p

Petar Marinković, Miriam S. Reuter, Monika S. Brill, Leanne Godinho, Martin Kerschensteiner, and Thomas Misgeld (2012). Axonal transport deficits and degeneration can evolve independently in mouse models of amyotrophic lateral sclerosis. PNAS DOI: 10.1073/pnas.1200658109

Stefanie Kaech, Chun-Fang Huang, and Gary Banker (2012). General Considerations for Live Imaging of Developing Hippocampal Neurons in Culture. Cold Spring Harb Protocols DOI: 10.1101/pdb.ip068221

Andrew J. Ewald, Robert J. Huebner, Hildur Palsdottir, Jessie K. Lee, Melissa J. Perez, Danielle M. Jorgens, Andrew N. Tauscher, Kevin J. Cheung, Zena Werb, and Manfred Auer (2012). Mammary collective cell migration involves transient loss of epithelial features and individual cell migration within the epithelium. Journal of Cell Sci jcs.096875 DOI: 10.1242/jcs.096875

Vedakumar Tatavarty, Marius F. Ifrim, Mikhail Levin, George Korza, Elisa Barbarese, Ji Yu, and John H. Carson (2012). Single molecule imaging of translational output from individual RNA granules in neurons. Mol. Biol. Cell mbc.E11-07-0622 DOI: 10.1091/mbc.E11-07-0622

Joshua M. Katzenstein, Dustin W. Janes, Haley E. Hocker, Justin K. Chandler, and Christopher J. Ellison (2012). Nanoconfined Self-Diffusion of Poly(isobutyl methacrylate) in Films with a Thickness-Independent Glass Transition. Macromolecules 45 (3), 1544-1552 DOI: 10.1021/ma202362j

Deanna M. Navaroli, Karl D. Bellvé, Clive Standley, Lawrence M. Lifshitz, James Cardia, David Lambright, Deborah Leonard, Kevin E. Fogarty, and Silvia Corvera (2012). Rabenosyn-5 defines the fate of the transferrin receptor following clathrin-mediated endocytosis. PNAS DOI:10.1073/pnas.1115495109

Remi Renaud, Claire Martin, Hirac Gurden, and Frederic Pain (2012). Multispectral reflectance imaging of brain activation in rodents: methodological study of the differential path length estimations and first in vivo recordings in the rat olfactory bulb. Journal of Biomedical Optics 17, 016012 DOI: 10.1117/1.JBO.17.1.016012

André Lampe, Volker Haucke, Stephan J. Sigrist, Mike Heilemann, Jan Schmoranzer (2012). Multi-colour direct STORM with red emitting carbocyanines. Biology of the Cell DOI: 10.1111/boc.201100011

J. Bradley Zuchero, Brittany Belin, and R. Dyche Mullins (2012). Actin Binding to WH2 Domains Regulates Nuclear Import of the Multifunctional Actin Regulator JMY. Molecular Biology of The Cell DOI: mbc.E11-12-0992

Jean-Cheng Kuo, Xuemei Han, John R. Yates and Clare M. Waterman (2012). Isolation of Focal Adhesion Proteins for Biochemical and Proteomic Analysis. Methods in Molecular Biology: Integrin and Cell Adhesion Molecules, Volume 757, Part 4, 297-323 DOI: 10.1007/978-1-61779-166-6_19

Vladimir Lizunov, Karin Stenkula, Ivonne Lisinski, Oksana Gavrilova, Dena R. Yver, Alexandra Chadt, H Al-Hasani, Joshua Zimmerberg, and Samuel W. Cushman (2012). Insulin stimulates fusion, but not tethering, of GLUT4 vesicles in skeletal muscle of transgenic mouse. American Journal of Physiology DOI: 10.1152/ajpendo.00466.2011

Subhasri Ghosh, Suvrajit Saha, Debanjan Goswami, Sameera Bilgrami, Satyajit Mayor, Chapter sixteen - Dynamic Imaging of Homo-FRET in Live Cells by Fluorescence Anisotropy Microscopy, In: P.Michael Conn, Editor(s), Methods in Enzymology, Academic Press, 2012, Volume 505, Pages 291-327, ISSN 0076-6879. DOI: 10.1016/B978-0-12-388448-0.00024-3

Total 2012 citation: 96

2011

Christian Conrad, Annelie Wünsche, Tze Heng Tan, Jutta Bulkescher, Frank Sieckmann, Fatima Verissimo, Arthur Edelstein, Thomas Walter, Urban Liebel, Rainer Pepperkok & Jan Ellenberg (2011). Micropilot: automation of fluorescence microscopy-based imaging for systems biology. Nature Methods 1548-7091 DOI: 10.1038/nmeth.1558

Dimiter Prodanov (2011). Data Ontology and an Information System Realization for Web-Based Management of Image Measurements. Frontiers in Neuroinformatics DOI: 10.3389/fninf.2011.00025

Iris Sarchizian, Marinela Cirnu, Ioan I. Ardelean (2011). Isolation of a heterocyts - forming Cyanobacterium and quantification of its biotechnological potential with respect to redox properties at single cell level. Romanian Biotechnological Letters Vol. 16, No.6, 2011, Supplement DOI: PDF file

Shawna C. O. Reed, Alisa W. Serio, Matthew D. Welch (2011), Rickettsia parkeri invasion of diverse host cells involves an Arp2/3 complex, WAVE complex and Rho-family GTPase-dependent pathway. Cellular Microbiology 1462-5822. DOI: 10.1111/j.1462-5822.2011.01739.x

Rose Loughlin, Jeremy D. Wilbur, Francis J. McNally, François J. Nédélec, Rebecca Heald (2011), Katanin Contributes to Interspecies Spindle Length Scaling in Xenopus. Cell Volume 147, Issue 6. DOI: 10.1016/j.cell.2011.11.014

Hench J , Bratić Hench I , Pujol C , Ipsen S , Brodesser S , et al. (2011) A Tissue-Specific Approach to the Analysis of Metabolic Changes in Caenorhabditis elegans. PLoS ONE 6(12): e28417. DOI: 10.1371/journal.pone.0028417

Milanova, D., Chambers, R. D., Bahga, S. S. and Santiago, J. G. (2011), Electrophoretic mobility measurements of fluorescent dyes using on-chip capillary electrophoresis. ELECTROPHORESIS, 32: 3286–3294. DOI: 10.1002/elps.201100210

Taizo Kawano1, Michelle D. Po1, Shangbang Gao1, George Leung, William S. Ryu, Mei Zhen (2011), An Imbalancing Act: Gap Junctions Reduce the Backward Motor Circuit Activity to Bias C. elegans for Forward Locomotion. Neuron Volume 72, Issue 4 DOI: 10.1016/j.neuron.2011.09.005

Yuli Wang, Pavak Shah, Colleen Phillips, Christopher E. Sims and Nancy L. Allbritton (2011), Trapping cells on a stretchable microwell array for single-cell analysis. Analytical and Bioanalytical Chemistry DOI: 10.1007/s00216-011-5535-9

Danny A. Stark, Rowan M. Karvas, Ashley L. Siegel, and D. D. W. Cornelison (2011), Eph/ephrin interactions modulate muscle satellite cell motility and patterning. Development DOI: 10.1242/dev.068411

Leavesley, S. J., Annamdevula, N., Boni, J., Stocker, S., Grant, K., Troyanovsky, B., Rich, T. C. and Alvarez, D. F. (2011), Hyperspectral imaging microscopy for identification and quantitative analysis of fluorescently-labeled cells in highly autofluorescent tissue. Journal of Biophotonics DOI: 10.1002/jbio.201100066

Patent: Chambers, Robert D. (Enfield, NH, US), Santiago, Juan G. (Stanford, CA, US), Bercovici, Moran (Santa Clara, CA, US) 2011. Non-focusing tracers for indirect detection in electrophoretic displacement techniques. United States 20110220499

Yinglang Wan, William M Ash, Lusheng Fan, Huaiqin Hao, Myung K Kim and Jinxing Lin (2011). Variable-angle total internal reflection fluorescence microscopy of intact cells of Arabidopsis thaliana. Plant Methods 7:27. DOI:10.1186/1746-4811-7-27

Jared E Toettcher, Delquin Gong, Wendell A Lim & Orion D Weiner (2011). Light-based feedback for controlling intracellular signaling dynamics. Nature Methods 8, 1548-7105. DOI:10.1038/nmeth.1700

Guillermo A. Yudowski and Mark von Zastrow (2011). Investigating G Protein-Coupled Receptor Endocytosis and Trafficking by TIR-FM. Methods in Molecular Biology 756:325-332. DOI: 10.1007/978-1-61779-160-4_19

Thai V Truong, Willy Supatto, David S Koos, John M Choi & Scott E Fraser (2011). Deep and fast live imaging with two-photon scanned light-sheet microscopy. Nature Methods 8, 757–760 (2011) doi:10.1038/nmeth.1652

D. Kilinc, J. M Peyrin, V. Soubeyre, S. Magnifico, L. Saias, J. L Viovy, B. Brugg. (2011). Wallerian-Like Degeneration of Central Neurons After Synchronized and Geometrically Registered Mass Axotomy in a Three-Compartmental Microfluidic Chip. Neurotoxicity research. 19:149-161. doi:10.1007/s12640-010-9152-8

Koen J. C. Verbrugghe, Raymond C. Chan (2011). Imaging C. elegans Embryos using an Epifluorescent Microscope and Open Source Software. Journal of Visualized Experiments DOI:10.3791/2625

Maarten H.P. Kole (2011). First Node of Ranvier Facilitates High-Frequency Burst Encoding. Neuron 71:671-682. doi: 10.1016/j.neuron.2011.06.024

Sanchari Bhattacharya, Tzu-Chiao Chao, and Alexandra Ros (2011). Insulator-based dielectrophoretic single particle and single cancer cell trapping. Electrophoresis DOI: 10.1002/elps.201100066

Stanislav Vitha and Katherine W. Osteryoung (2011). Immunofluorescence Microscopy for Localization of Arabidopsis Chloroplast Proteins. Methods in Molecular Biology 774:33-58 DOI: 10.1007/978-1-61779-234-2_3

Benoît Kornmann, Christof Osman, and Peter Walter (2011). The conserved GTPase Gem1 regulates endoplasmic reticulum–mitochondria connections. PNAS doi: 10.1073/pnas.1111314108

Young-Hwan Song, Euna Choi, Sun-Hyun Park, Suk-Ho Lee, Hana Cho, Won-Kyung Ho, and Shin-Young Ryu (2011). Sustained CaMKII activity mediates transient oxidative stress-induced long-term facilitation of L-type Ca2+ current in cardiomyocytes. Free Radical Biology and Medicine doi:10.1016/j.freeradbiomed.2011.07.022

Asuka Nakano, Tzu-Chiao Chao, Fernanda Camacho-Alanis, and Alexandra Ros (20111). Immunoglobulin G and bovine serum albumin streaming dielectrophoresis in a microfluidic device. Electrophoresis. In Press. doi: 10.1002/elps.201100037

Y Wakamoto, A.Y. Grosberg, and E. Kussell (2011). Optimal lineage principle for age-structured populations. Evolution In Press. doi: 10.1111/j.1558-5646.2011.01418.x

Eric Campeau (2011). RNA interference in mammals: behind the screen. Briefings in Functional Genomics 10:215-226. doi: 10.1093/bfgp/elr018

Ivo A. Telley, Peter Bieling and Thomas Surrey (2011). Reconstitution and Quantification of Dynamic Microtubule End Tracking In Vitro Using TIRF Microscopy. Methods in Molecular Biology 777:127-145 doi: 10.1007/978-1-61779-252-6_10

Aaron G. Blankenship, Aaron M. Hamby, Alana Firl, Shri Vyas, Stephan Maxeiner, Klaus Willecke, and Marla B. Feller (2011). The Role of Neuronal Connexins 36 and 45 in Shaping Spontaneous Firing Patterns in the Developing Retina. The Journal of Neuroscience 31:9998-10008 doi: 10.1523/​JNEUROSCI.5640-10.2011

Min S. Wang, Joshua C. Black, Michelle K. Knowles and Scott M. Reed (2011). C-reactive protein (CRP) aptamer binds to monomeric but not pentameric form of CRP. Analytical and BioAnalytical Chemistry doi: 10.1007/s00216-011-5174-1

Keren K. Griffiths, Jingqiao Zhang, Ann E. Cowan, Ji Yu, Peter Setlow (2011). Germination proteins in the inner membrane of dormant Bacillus subtilis spores colocalize in a discrete cluster. Molecular Microbiology DOI: 10.1111/j.1365-2958.2011.07753.x

Poole RJ, Bashllari E, Cochella L, Flowers EB, Hobert O, (2011) A Genome-Wide RNAi Screen for Factors Involved in Neuronal Specification in Caenorhabditis elegans. PLoS Genet 7(6): e1002109. doi:10.1371/journal.pgen.1002109

Godefroid Charbon, Eric Brustad, Kevin A. Scott, Jiangyun Wang, Anders Løbner-Olesen, Peter G. Schultz, Christine Jacobs-Wagner, and Eli Chapman (2011). Subcellular Protein Localization by Using a Genetically Encoded Fluorescent Amino Acid. ChemBioChem 12: n/a.DOI: 10.1002/cbic.201100282

Luciano Marpegan, Adrienne E. Swanstrom, Kevin Chung, Tatiana Simon, Philip G. Haydon, Sanjoy K. Khan, Andrew C. Liu, Erik D. Herzog, and Christian Beaulé (2011). Circadian Regulation of ATP Release in Astrocytes. The Journal of Neuroscience, 31: 8342-8350. doi: 10.1523/​JNEUROSCI.6537-10.2011

Michael Carnell, Tobias Zech, Simon D. Calaminus, Seiji Ura, Monica Hagedorn, Simon A. Johnston, Robin C. May, Thierry Soldati, Laura M. Machesky, and Robert H. Insall (2011). Actin polymerization driven by WASH causes V-ATPase retrieval and vesicle neutralization before exocytosis. JCB doi: 10.1083/jcb.201009119

J. Husson, K. Chemin, A. Bohineust, C. Hivroz, N. Henry. (2011). Force Generation upon T Cell Receptor Engagement. PLoS ONE. 6:e19680. doi:10.1371/journal.pone.0019680

C. Jackson, E. Glory-Afshar, R. F. Murphy, J. Kova evi. (2011). Model building and intelligent acquisition with application to protein subcellular location classification. Bioinformatics. :. doi:10.1093/bioinformatics/btr286 PMID 21558154 PMCID 3117392

Jing Li, Nima Najand, Wendy Long and Andrew Simmonds (2011). Imaging the Cellular Dynamics of Drosophila Argonaute Proteins. Methods in Molecular Biology. 725, 143-159 doi:0.1007/978-1-61779-046-1_10. PMID 21528452.

Looney, M.R., Thornton, E.E., Sen, D., Lamm, W.J., Glenny, R.W., and Krummel, M.F. (2011). Stabilized imaging of immune surveillance in the mouse lung. Nat Methods. 8, 91–96 doi:10.1038/nmeth.1543 PMID 21151136 PMCID 3076005

Debjani Paul, Laure Saias, Jean-Cedric Pedinotti, Max Chabert, Sebastien Magnifico, Antoine Pallandre, Bertrand De Lambert, Claude Houdayer, Bernard Brugg, Jean-Michel Peyrin, and Jean-Louis Viovy (2011). A “dry and wet hybrid” lithography technique for multilevel replication templates: Applications to microfluidic neuron culture and two-phase global mixing. BioMicrofluidics 5, 024102 doi:10.1063/1.3569946

Heather I. C. Dalgarno, Paul A. Dalgarno, Adetunmise C. Dada, Catherine E. Towers, Gavin J. Gibson, Richard M. Parton, Ilan Davis, Richard J. Warburton and Alan H. Greenaway (2011). Nanometric depth resolution from multi-focal images in microscopy. Interface doi: 10.1098/​rsif.2010.0508 PMID 21247948 PMCID 3104330

Estrella Guarino, Marianne E. A. Shepherd, Israel Salguero, Hui Hua, Rachel S. Deegan and Stephen E. Kearsey (2011). Cdt1 proteolysis is promoted by dual PIP degrons and is modulated by PCNA ubiquitylation. Nucleic Acids Research doi: 10.1093/nar/gkr222 PMID 21493688

Andrea E. Knowlton, Heather M. Brown, Theresa S. Richards, Lauren A. Andreolas, Rahul K. Patel, Scott S. Grieshaber. (2011). Chlamydia trachomatis infection causes mitotic spindle pole defects independently from its effects on centrosome amplification. Traffic doi: 10.1111/j.1600-0854.2011.01204.x PMID 21477082 PMCID 3116664

Ulrich Y. Schaff1 and Greg J. Sommer (2011). Whole Blood Immunoassay Based on Centrifugal Bead Sedimentatio. Clinical Chemistry doi:10.1373/clinchem.2011.162206 PMID 21415382

Rosario Scalia, Yulan Gong, Brett Berzins, Brin Freund, Danielle Feather, and Gavin Landesberg Gourav Mishra (2011). A Novel Role for Calpain in the Endothelial Dysfunction Induced by Activation of Angiotensin II Type 1 Receptor Signaling. Circulation Research doi:10.1161/CIRCRESAHA.110.229393 PMID 21415394

Claudia Rubio, David Pincus, Alexei Korennykh, Sebastian Schuck, Hana El-Samad, and Peter Walter (2011). Homeostatic adaptation to endoplasmic reticulum stress depends on Ire1 kinase activity. J Cell Biol 2011 doi:10.1083/jcb.201007077 PMID 21444688 PMCID 3082173

Charles A. Harris, Joel T. Haas, Ryan S. Streeper, Scot J. Stone, Manju Kumari, Kui Yang, Xianlin Han, Nicholas Brownell, Richard W. Gross, Rudolf Zechner and Robert V. Farese Jr (2011). DGAT enzymes are required for triacylglycerol synthesis and lipid droplets in adipocytes. The Journal of Lipid Research, 52 657 doi:10.1194/jlr.M013003 PMID 21317108

B.C. Dickinson, Moffatt, C.E., Hagerty, D., Whitmore, S.E., Brown, T.A., Graves, D.T. and Lamont, R.J.. (2011). Interaction of oral bacteria with gingival epithelial cell multilayers. Molecular Oral Microbiology. :. doi:10.1111/j.2041-1014.2011.00609.x PMID 21545698

Kathleen E. Fischer, Ganesh Nagaraj, R. Hugh Daniels, Esther Li, Verne E. Cowles, Jennifer L. Miller, Mark D. Bunger, Tejal A. Desai. (2011). Hierarchical nanoengineered surfaces for enhanced cytoadhesion and drug delivery. Biomaterials. 32:3499-3506. doi:10.1016/j.biomaterials.2011.01.022 PMID 21296409 PMCID 3086716

Devrim Kilinc, Jean-Michel Peyrin, Vanessa Soubeyre, Sebastien Magnifico, Laure Saias, Jean-Louis Viovy, and Bernard Brug. (2011). Wallerian-Like Degeneration of Central Neurons After Synchronized and Geometrically Registered Mass Axotomy in a Three-Compartmental Microfluidic Chip. Neurotox Res. 19:149-161. doi:10.1007/s12640-010-9152-8 PMID 20162389 PMCID 3006648

Christopher M. Brown, Manisha Ray, Aura A. Eroy-Reveles, Pascal Egea, Cheryl Tajon, and Charles S. Craik. (2011). Peptide Length and Leaving-Group Sterics Influence Potency of Peptide Phosphonate Protease Inhibitors. Chemistry & Biology 18:48-57 doi:10.1016/j.chembiol.2010.11.007 PMID 21276938 PMCID 3074588

Matthew I. Hoopes, Roland Faller, and Marjorie L. Longo. (2011). Lipid Domain Depletion at Small Localized Bends Imposed by a Step Geometry. Langmuir 27:2783-2788 doi:10.1021/la104504p PMID 21338070

Ricardo Henriques, Caron Griffiths, E. Hesper Rego, and Musa M. Mhlanga (2011). PALM and STORM: Unlocking live-cell super-resolution. Biopolymers 95:322-331 doi:10.1002/bip.21586 PMID 21254001

Rachel McMullan, and Stephen J. Nurrish. (2011). The RHO-1 RhoGTPase Modulates Fertility and Multiple Behaviors in Adult C. elegans. PLoS ONE (2): e17265. doi:10.1371/journal.pone.0017265 PMID 21387015 PMCID 3046162

Saravanan Rajan, Haig Djambazian, Huan Chu Pham Dang, Rob Sladek, and Thomas J Hudson. (2011). The living microarray: a high-throughput platform for measuring transcription dynamics in single cells. BMC Genomics 12:115. doi:10.1186/1471-2164-12-115 PMID 21324195 PMCID 3050818

Hui Hua, and Stephen E. Kearsey (2011). Monitoring DNA replication in fission yeast by incorporation of 5-ethynyl-2′-deoxyuridine. Nucl. Acids Res. doi:10.1093/nar/gkr063 PMID 21310713 PMCID 3089489

Nicolas Minc, David Burgess, and Fred Chang. (2011). Influence of Cell Geometry on Division-Plane Positioning. Cell 144: 427-438 doi:10.1016/j.cell.2011.01.016 PMID 21295701 PMCID 3048034

Christian Conrad, Annelie Wünsche, Tze Heng Tan, Jutta Bulkescher,Frank Sieckmann, Fatima Verissimo, Arthur Edelstein, Thomas Walter, Urban Liebel, Rainer Pepperkok & Jan Ellenberg. (2011). Micropilot: automation of fluorescence microscopy–based imaging for systems biology. Nature Methods 8:246–249 doi:10.1038/nmeth.1558 PMID 21258339 PMCID 3086017

Total 2011 citations: 57

2010

Bruno Afonso, Pamela A. Silver, and Caroline M. Ajo-Franklin (2011). A synthetic circuit for selectively arresting daughter cells to create aging populations. Nucleic Acids Res. 38:2727–2735. doi: 10.1093/nar/gkq075

Ikuko Fujiwara, Kirsten Remmert, John A. Hammer. (2010). Direct Observation of the Uncapping of Capping Protein-capped Actin Filaments by CARMIL Homology Domain 3. Journal of Biological Chemistry. 285:2707 -2720. doi:10.1074/jbc.M109.031203 PMID 19926785 PMCID 2807327

G. Civelekoglu-Scholey, J.M. Scholey. (2010). Mitotic force generators and chromosome segregation. Cellular and molecular life sciences. 67:1-20. doi:10.1007/s00018-010-0326-6 PMID 20221784 PMCID 2883081

Shalin B. Mehta, Colin J. R. Sheppard. (2010). Using the phase-space imager to analyze partially coherent imaging systems: bright-field, phase contrast, differential interference contrast, differential phase contrast, and spiral phase contrast. Journal of Modern Optics. 57:718-739. doi:10.1080/09500340.2010.481729

Supreet S. Bahga, Moran Bercovici, Juan G. Santiago (2011). Ionic strength effects on electrophoretic focusing and separations. Electrophoresis 31:910-919 DOI: 10.1002/elps.200900560 PMID 20191554

Thorsten Wohland, Xianke Shi, Jagadish Sankaran, and Ernst H.K. Stelzer (2010). Single Plane Illumination Fluorescence Correlation Spectroscopy (SPIM-FCS) probes inhomogeneous three-dimensional environments. Optics Express 18: 10627-10641 doi:10.1364/OE.18.010627 PMID 20588915

David F. Savage, Bruno Afonso, Anna H. Chen and Pamela A. Silver (2010). Spatially Ordered Dynamics of the Bacterial Carbon Fixation Machinery Science 327:1258-1261 DOI: 10.1126/science.1186090 PMID 20203050

Fanjie Meng, Thams M. Suchyna, Elena Lazakovitch, Richard M. Gronostajski, and Frederick Sachs (2010). Real Time FRET Based Detection of Mechanical Stress in Cytoskeletal and Extracellular Matrix Proteins. Cellular and Molecular Bioengineering published online Sept. 2010 DOI: 10.1007/s12195-010-0140-0

D. Pincus, M.W. Chevalier, T. Aragón, E. Van Anken, S.E. Vidal, H. El-Samad, P. Walter. (2010). BiP binding to the ER-stress sensor Ire1 tunes the homeostatic behavior of the unfolded protein response. PLoS Biology. 8:519-529. doi:10.1371/journal.pbio.1000415 PMID 20625545 PMCID 2897766

H. Li, A.V. Korennykh, S.L. Behrman, P. Walter. (2010). Mammalian endoplasmic reticulum stress sensor IRE1 signals by dynamic clustering. Proceedings of the National Academy of Sciences. 107:16113. doi:10.1073/pnas.1010580107 PMID 20798350 PMCID 2941319

M.A. Puthenveedu, B. Lauffer, P. Temkin, R. Vistein, P. Carlton, K. Thorn, J. Taunton, O.D. Weiner, R.G. Parton, M. von Zastrow. (2010). Sequence-Dependent Sorting of Recycling Proteins by Actin-Stabilized Endosomal Microdomains. Cell. 143:761-773. doi:10.1016/j.cell.2010.10.003 PMID 21111236 PMCID 3058345

Yanjie Zhang, Allison M. Schnoes, and Aaron R. Clapp. (2010). Dithiocarbamates as Capping Ligands for Water-Soluble Quantum Dots. ACS Appl. Mater. Interfaces 2:3384-3395 DOI: 10.1021/am100996g PMID 21053924

Andrew D Goldsmith, Sumeet Sarin, Shawn Lockery, and Oliver Hobert. (2010). Developmental control of lateralized neuron size in the nematode Caenorhabditis elegans. Neural development 5:33 doi:10.1186/1749-8104-5-33 PMID 21122110 PMCID 3014911

Thomas M. Huckaba, Arne Gennerich, James E. Wilhelm, Athar H. Chishti and Ronald D. Vale. (2010. Kinesin-73 is a processive motor that localizes to Rab5-containing organelle. JBC doi: 10.1074/jbc.M110.167023 PMID 21169635 PMCID 3045001

Liu, A.P., Aguet, F., Danuser, G., and Schmid, S.L. (2010). Local clustering of transferrin receptors promotes clathrin-coated pit initiation. JCB 191:1381-1393. doi: 10.1083/jcb.201008117 PMID 21187331 PMCID 3010081

Razooky, B.S., and Weinberger, L.S. (2010). Mapping the architecture of the HIV-1 Tat circuit: A decision-making circuit that lacks bistability and exploits stochastic noise. Methods doi:10.1016/j.ymeth.2010.12.006 PMID 21167940

Walston T, and Hardin J. (2010). Acquisition of 4D DIC Microscopic Data to Determine Cell Contacts in Caenorhabditis elegans Embryos. Cold Spring Harb Protoc. 2010:pdb.prot5541. doi: 10.1101/pdb.prot5541 PMID 21123428

Uehara R, and Goshima, G. (2010). Functional central spindle assembly requires de novo microtubule generation in the interchromosomal region during anaphase. JCB 191:259-267. doi:10.1083/jcb.201004150 PMID 20937700 PMCID 2958471

Moss, J, et al. (2010). Break-induced ATR and Ddb1–Cul4Cdt2 ubiquitin ligase-dependent nucleotide synthesis promotes homologous recombination repair in fission yeast. Genes & Dev. 24: 2705-2716 doi: 10.1101/gad.1970810 PMID 21123655 PMCID 2994043

Brian Alan Ashcroft and Tjerk Oosterkamp (2010). AutoMicromanager: A microscopy scripting toolkit for LABVIEW and other programming environments. Rev. Sci. Instrum. 81:113708-113712 doi:10.1063/1.3499370 PMID 21133479

Goldsmith AD, Sarin S, Lockery S, and Hobert, O. (2010) Developmental control of lateralized neuron size in the nematode Caenorhabditis elegans. Neural Development 5:33 doi:10.1186/1749-8104-5-33 PMID 21122110 PMCID 3014911

Biehlmaier O, Hehl J, and Csucs G. (2010). Acquisition speed comparison of microscope software programs. Microsc Res Tech. (Epub ahead of print) DOI: 10.1002/jemt.20944 PMID 21086451

Liisa M. Hirvonen, and Trevor A. Smith. (2010). Imaging on the Nanoscale: Super-Resolution Fluorescence Microscopy Australian Journal of Chemistry 64: 415-45 doi:10.1071/CH10333

Yehonathan Bar-Yosef, Assaf Sukenik, Ora Hadas, Yehudit Viner-Mozzini and Aaron Kaplan (2010). Enslavement in the Water Body by Toxic Aphanizomenon ovalisporum, Inducing Alkaline Phosphatase in Phytoplanktons. Current Biology 20:1557-1561. doi:10.1016/j.cub.2010.07.032 PMID 20705465

Scott D. Hansen and R. Dyche Mullins (2010). VASP is a processive actin polymerase that requires monomeric actin for barbed end association. JCB 191:571-584. doi:10.1083/jcb.201003014 PMID 21041447 PMCID 3003327

Nicholas W. Frost and Michael T. Bowser (2010). Using buffer additives to improve analyte stream stability in micro free flow electrophoresis. Lab Chip 10:1231-1236 doi: 10.1039/B922325H PMID 20445874 PMCID 2903047

Guangshuo Ou, Nico Stuurman, Michael D’Ambrosio, and Ronald D. Vale (2010). Polarized Myosin Produces Unequal-Size Daughters During Asymmetric Cell Division. Science 330:677-680. doi:10.1126/science.1196112 PMID 20929735 PMCID 3032534

Benjamin S. Freedman, Kelly E. Miller, Rebecca Heald (2010). Xenopus Egg Extracts Increase Dynamics of Histone H1 on Sperm Chromatin. PLoS ONE 5(9): e13111. doi:10.1371/journal.pone.0013111 PMID 20927327 PMCID 2947519

Simon Blanchoud, Yemima Budirahardja, Félix Naef, Pierre Gönczy (2010). ASSET: A robust algorithm for the automated segmentation and standardization of early Caenorhabditis elegans embryos. Developmental Dynamics 239:3285-3296. doi:10.1002/dvdy.22486 PMID 21089077

Sarah S. Goodwin and Ronald D. Vale (2010.) Patronin Regulates the Microtubule Network by Protecting Microtubule Minus Ends. Cell 143:263-274. doi:10.1016/j.cell.2010.09.022 PMID 20946984 PMCID 3008421

Michael V. D'Ambrosio and Ronald D. Vale (2010). A whole genome RNAi screen of Drosophila S2 cell spreading performed using automated computational image analysis. J Cell Biol 191:471-478. doi:10.1083/jcb.201003135 PMID 21041442 PMCID 3003316

Veliz LA, Toro CA, Vivar JP, Arias LA, Villegas J, et al. (2010). Near-Membrane Dynamics and Capture of TRPM8 Channels within Transient Confinement Domains. PLoS ONE 5(10): e13290. doi:10.1371/journal.pone.0013290 PMID 20948964 PMCID 2952625

Douglas R. Mackay, Katharine S. Ullman, Christopher K. Rodesch (2010). Time-lapse Imaging of Mitosis After siRNA Transfection (2010) J Vis Exp. 40. doi: 10.3791/1878 PMID 20548280

Zhucheng Chen, Dominika Borek, Shae B. Padrick, Timothy S. Gomez, Zoltan Metlagel, Ayman M. Ismail, Junko Umetani, Daniel D. Billadeau, Zbyszek Otwinowski, and Michael K. Rosen (2010). Structure and control of the actin regulatory WAVE complex. Nature 468:533–538. doi:10.1038/nature09623 PMID 21107423 PMCID 3085272

C. M. Perrault, M. A. Qasaimeh, T. Brastaviceanu, K. Anderson, Y. Kabakibo, and D. Juncker (2010). Integrated microfluidic probe station. Rev. Sci. Instrum. 81:115107-115115. doi:10.1063/1.3497302 PMID 21133501

Arthur Edelstein, Nenad Amodaj, Karl Hoover, Ron Vale, and Nico Stuurman (2010) Computer Control of Microscopes Using μManager. Current Protocols in Molecular Biology 14.20.1-14.20.17 doi:10.1002/0471142727.mb1420s92 PMID 20890901 PMCID 3065365

Erin D. Goley, Aravind Rammohan, Elizabeth A. Znameroski, Elif Nur Firat-Karalar, David Sept, and Matthew D. Welch (2010). An actin-filament-binding interface on the Arp2/3 complex is critical for nucleation and branch stability. PNAS 107:8159-8164. doi: 10.1073/pnas.0911668107 PMID 20404198 PMCID 2889539

Yu C-h, Wu H-J, Kaizuka Y, Vale RD, Groves JT (2010) Altered Actin Centripetal Retrograde Flow in Physically Restricted Immunological Synapses. PLoS ONE 5(7): e11878. doi:10.1371/journal.pone.0011878 PMID 20686692 PMCID 2912367

Karin G. Stenkula, Vladimir A. Lizunov, 3, Samuel W. Cushman and Joshua Zimmerberg (2010). Insulin Controls the Spatial Distribution of GLUT4 on the Cell Surface through Regulation of Its Postfusion Dispersal. Cell Metabolism 12:250-259 doi:10.1016/j.cmet.2010.08.005 PMID 20816091

Michael J. Boyle, Rachael L. French, K. Amber Cosand, Jennie B. Dorman, Daniel P. Kiehart and Celeste A. Berg (2010). Division of labor: Subsets of dorsal-appendage-forming cells control the shape of the entire tube. Developmental Biology 346:68-79 doi::10.1016/j.ydbio.2010.07.018 PMID 20659448

Kurt Thorn (2010). Spinning-Disk Confocal Microscopy of Yeast. Methods in Enzymology 470:581-602 doi::10.1016/S0076-6879(10)70023-9 PMID 20946826

Shalin B. Mehta and Colin J. R. Sheppard (2010). Sample-less calibration of the differential interference contrast microscope. Applied optics 49: 2954-2968 doi:10.1364/AO.49.002954 PMID 20490258

Ricardo Henriques, Mickael Lelek, Eugenio F Fornasiero, Flavia Valtorta, Christophe Zimmer & Musa M Mhlanga (2010). QuickPALM: 3D real-time photoactivation nanoscopy image processing in ImageJ. Nature Methods 7:339–340 doi:10.1038/nmeth0510-339 PMID 20431545

Biswadip Das, Melanie N. Cash, Arthur R. Hand, Armin Shivazad, Scott S. Grieshaber, Bently Robinson and David J. Culp (2010) Tissue Distribution of Murine Muc19/Smgc Gene Products. Journal of Histochemistry & Cytochemistry 58(2): 141-156 doi:10.1369/jhc.2009.954891 PMID 19826070 PMCID 2803704

Anindya Ghosh-Roy, Zilu Wu, Alexandr Goncharov Yishi Jin and Andrew D. Chisholm (2010) Calcium and Cyclic AMP Promote Axonal Regeneration in Caenorhabditis elegans and Require DLK-1 Kinase. The Journal of Neuroscience 30(9):3175-3183 doi:10.1523/JNEUROSCI.5464-09.2010 PMID 20203177 PMCID 2921707

Shan Shan Kou, Laura Waller, George Barbastathis, and Colin J. R. Sheppard (2010) Transport-of-intensity approach to differential interference contrast (TI-DIC) microscopy for quantitative phase imaging. Optics Letters 35(3):447-449 doi:10.1364/OL.35.000447 PMID 20125750

John Oreopoulos, Raquel F. Epand, Richard M. Epand, and Christopher M. Yip (2010) Peptide-induced domain formation in supported lipid bilayers: Direct evidence by combined atomic force and polarized total internal reflection fluorescence microscopy. Biophysical Journal 98(5):815-823 doi:10.1016/j.bpj.2009.12.486 PMID 20197035 PMCID 2830440

Christian Conrad and Daniel Gerlich (2010). Automated microscopy for high-content RNAi screening. Journal of Cell Biology 188/4:453-461 doi:10.1083/jcb.200910105 PMID 20176920 PMCID 2828931

Jerome W. Breslin, Kristine M. Kurtz (2010). Lymphatic Endothelial Cells Adapt Their Barrier Function in Response to Changes in Shear Stress. Lymphatic Research and Biology 7(4):229-237 doi:10.1089/lrb.2009.0015 PMID 20143922 PMCID 2883493

David K. Breslow, Sean R. Collins, Bernd Bodenmiller, Ruedi Aebersold, Kai Simons, Andrej Shevchenko, Christer S. Ejsing, and Jonathan S. Weissman (2010). Orm family proteins mediate sphingolipid homeostasis. Nature 463:1048-1053 doi:10.1038/nature08787 PMID 20182505 PMCID 2877384

Total 2010 Citations: 50

2009

Thomas M Suchyna, Vladamir S Markin and Frederick Sachs (2009). Biophysics and Structure of the Patch and Gigaseal. Biophysical Journal 97: 738-747 doi:10.1016/j.bpj.2009.05.018 PMID 19651032 PMCID 2718145

A. Levskaya, O.D. Weiner, W.A. Lim, C.A. Voigt. (2009). Spatiotemporal control of cell signalling using a light-switchable protein interaction. Nature. 461:997-1001. doi:10.1038/nature08446 19749742

M.C. Jonikas, S.R. Collins, V. Denic, E. Oh, E.M. Quan, V. Schmid, J. Weibezahn, B. Schwappach, P. Walter, J.S. Weissman. (2009). Comprehensive characterization of genes required for protein folding in the endoplasmic reticulum. Science. 323:1693. doi:10.1126/science.1167983 19325107

B. Kornmann, E. Currie, S.R. Collins, M. Schuldiner, J. Nunnari, J.S. Weissman, P. Walter. (2009). An ER-mitochondria tethering complex revealed by a synthetic biology screen. Science. 325:477. doi:10.1126/science.1175088 19556461

S. Schuck, W.A. Prinz, K.S. Thorn, C. Voss, P. Walter. (2009). Membrane expansion alleviates endoplasmic reticulum stress independently of the unfolded protein response. The Journal of Cell Biology. 187:525. doi:10.1083/jcb.200907074 19948500

Matula, P., Maška, M., Danek, O., Matula, P., and Kozubek, M. (2009). Acquiarium: free software for the acquisition and analysis of 3D images of cells in fluorescence microscopy. In Proceedings of the Sixth IEEE international Conference on Symposium on Biomedical Imaging: From Nano To Macro (Boston, Massachusetts, USA, June 28 - July 01, 2009). IEEE Press, Piscataway, NJ, 1138-1141 [5]

Jungho Ohn, Huai-Jen Tsai, and Michael Liebling (2009). Joint dynamic imaging of morphogenesis and function in the developing heart. Organogenesis 5:166-173 link to pdf

A. Bernardini, C. Wotzlaw, H.-G. Lipinski, and J. Fandrey (2009). An Automated Real Time System for FRET Based Protein-Protein Interaction Analysis. IFMBE Proceedings 25/4:1056-1058 doi:10.1007/978-3-642-03882-2_281

James C. W. Locke and Michael B. Elowitz (2009). Using movies to analyse gene circuit dynamics in single cells. Nature Reviews Microbiology. doi:10.1038/nrmicro2056. PMID 19369953. PMCID 2853934

Vedakumar Tatavarty, Eun-Ji Kim, Vladimir Rodionov, and Ji Yu (2009). Investigating Sub-Spine Actin Dynamics in Rat Hippocampal Neurons with Super-Resolution Optical Imaging. PLoS One. doi:10.1371/journal.pone.0007724. PMID 19898630. PMCID 2771285

Biswadip Das, Melanie N. Cash, Arthur R. Hand, Armin Shivazad, Scott S. Grieshaber, Bently Robinson, and David J. Culp (2009). Tissue Distibution of Murine Muc19/Smgc Gene Products. J. Histochem. and Cytochem. doi:10.1369/jhc.2009.954891. PMID 19826070. PMCID 2803704

Ronald D. Vale, James A. Spudich, and Eric R. Griffis (2009). Dynamics of myosin, microtubules, and Kinesin-6 at the cortex during cytokinesis in Drosophila S2 cells. J. Cell Biol. 186:727-738 doi:10.1083/jcb.200902083. PMID 19720876. PMCID 2742194

Grossmann S, Higashiyama S, Oksche A, Schaefer M, and Tannert A (2009). Localisation of endothelin B receptor variants to plasma membrane microdomains and its effects on downstream signalling. Mol Membr Biol. 26:279-292. doi:10.1080/09687680903191682. PMID 19757321.

Miao-Hsueh Chen, Christopher W. Wilson, Ya-Jun Li, Kelvin King Lo Law, Chi-Sheng Lu, Rhodora Gacayan, Xiaoyun Zhang, Chi-chung Hui, and Pao-Tien Chuang (2009). Cilium-independent regulation of Gli protein function by Sufu in Hedgehog signaling is evolutionarily conserved. Genes & Development 23:1910-1928 doi: 10.1101/gad.1794109 . PMID 19684112. PMCID 2725943

Christopher W. Wilson, Catherine T. Nguyen, Miao-Hsueh Chen, Jehn-Hsiahn Yang, Rhodora Gacayan, Jie Huang, Jau-Nian Chen & Pao-Tien Chuang (2009). Fused has evolved divergent roles in vertebrate Hedgehog signalling and motile ciliogenesis. Nature 459:98-102 doi:10.1038/nature07883

Margaret Lin Veruki and Espen Hartveit (2009). Meclofenamic Acid Blocks Electrical Synapses of Retinal AII Amacrine and ON-Cone Bipolar Cells. J Neurophysiol 101: 2339-2347 doi:10.1152/jn.00112.2009. PMID 19279153.

Jonathan M. Glynn, Yue Yang, Stanislav Vitha, Aaron J. Schmitz, Mia Hemmes, Shin-ya Miyagishima, and Katherine W. Osteryoung (2009). PARC6, a novel chloroplast division factor, influences FtsZ assembly and is required for recruitment of PDV1 during chloroplast division in Arabidopsis. The Plant Journal 59:700-711 doi:10.1111/j.1365-313X.2009.03905.x. PMID 19453460.

Yoshihisa Kaizuka, Adam D. Douglass, Santosh Vardhana, Michael L. Dustin, and Ronald D. Vale (2009). The coreceptor CD2 uses plasma membrane microdomains to transduce signals in T cells. J. Cell Biol. [doi:10.1083/jcb.200809136. PMID 19398758. PMCID 2700390

Guangshuo Ou, and Ronald D. Vale (2009). Molecular signatures of cell migration in C. elegans Q neuroblasts. J. Cell Biol. 185:77-85 doi:10.1083/jcb.200812077. PMID 19349580. PMCID 2700521

Liisa M. Hirvonen, Kai Wicker, Ondrej Mandula and Rainer Heintzmann (2009). Structured illumination microscopy of a living cell. European Biophysics Journal 38:807-812 doi:10.1007/s00249-009-0501-6. PMID 19536533.

J. Bradley Zuchero, Amanda S. Coutts, Margot E. Quinlan, Nicholas B. La Thangue & R. Dyche Mullins (2009). p53-cofactor JMY is a multifunctional actin nucleation factor. Nature Cell Biology 11:451-459 doi:10.1038/ncb1852. PMID 19287377. PMCID 2763628

Andrew D Straw, and Michael H Dickinson (2009). Motmot, an open-source toolkit for realtime video acquisition and analysis. Source Code Biol Med. 4:5. doi:10.1186/1751-0473-4-5. PMID 19624853. PMCID 2732620

H. Khodja, M. Hanot, b, M. Carrièr, b, J. Hoarau, b and J.F. Angulo (2009). The single-particle microbeam facility at CEA-Saclay. Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms 267:1999-2002. doi:10.1016/j.nimb.2009.03.040

Franco J. Vizeacoumar, Yolanda Chong, Charles Boone and Brenda J. Andrews (2009). A picture is worth a thousand words: Genomics to phenomics in the yeast Saccharomyces cerevisiae. FEBS Letters. 583:1656-1661. doi:10.1016/j.febslet.2009.03.068 PMID 19351535.

X. Michalet, R.A. Colyer, J. Antelman, O.H.W. Siegmund, A. Tremsin, J.V. Vallerga, and S. Weiss (2009). Single-Quantum Dot Imaging with a Photon Counting Camera. Current Pharmaceutical Biotechnology 10:543-558 PMID 19689323 PMCID 2830710

John Oreopoulos and Christopher M. Yip (2009). Combinatorial microscopy for the study of protein–membrane interactions in supported lipid bilayers: Order parameter measurements by combined polarized TIRFM/AFM. J Struct Biol. 168:21-36. doi:10.1016/j.jsb.2009.02.011. PMID 19268707.

Julia R. Kardon, Samara L. Reck-Peterson, and Ronald D. Vale (2009). Regulation of the processivity and intracellular localization of Saccharomyces cerevisiae dynein by dynactin. PNAS. 106:5669-5674. doi: 10.1073/pnas.0900976106 PMID 19293377. PMCID 2657088

Samways, D.S., Harkins, A.B. & Egan, T.M (2009). Native and recombinant ASIC1a receptors conduct negligible Ca2+ entry. Cell Calcium. 45:319-325. doi:10.1016/j.ceca.2008.12.002. PMID 19185346. PMCID 2890224

Chambers, R.D. & Santiago, J.G (2009). Imaging and Quantification of Isotachophoresis Zones Using Nonfocusing Fluorescent Tracers. Analytical Chemistry. Early publication online. doi:10.1021/ac802698a. PMID 19290665.

Total 2009 Citations: 28

2008

Maya Schuldiner, Jutta Metz, Volker Schmid, Vladimir Denic, Magdalena Rakwalska, Hans Dieter Schmitt, Blanche Schwappach, Jonathan S. Weissman. (2008-08-22). The GET Complex Mediates Insertion of Tail-Anchored Proteins into the ER Membrane. Cell. 134:634-645. doi:10.1016/j.cell.2008.06.025

Moreira KE, Walther TC, Aguilar PS, Walter P. (2008) Pil1 Controls Eisosome Biogenesis. Mol. Biol. Cell. 20: 809-818. doi:10.1091/mbc.E08-03-0313. PMID 19037108. PMCID 2633383

Olivier Debeir, Ivan Adanja, Robert Kiss & Christine Decaestecker (2008). Models of cancer cell migration and cellular imaging and analysis. Chapter 5 of The motile actin system in health and disease. Edited by: Lambrechts A, Ampe C. Kerala: Transworld Research Network, pp 123-156. PDF

Bashkirov, P.V. et al (2008). GTPase Cycle of Dynamin Is Coupled to Membrane Squeeze and Release, Leading to Spontaneous Fission. Cell. 135:1276-1286. doi:10.1016/j.cell.2008.11.028. PMID 19084269. PMCID 2768395

Zimberlin, J.A., Wadsworth, P. & Crosby, A.J . Living microlens arrays (2008). Cell Motility and the Cytoskeleton. 65. doi:10.1002/cm.20302. PMID 18615631. PMCID 2848389

Aragón, T. et al (2008). Messenger RNA targeting to endoplasmic reticulum stress signalling sites. Nature. 457:736-740. doi:10.1038/nature07641. PMID 19079237. PMCID 2768538

Merksamer, P.I., Trusina, A. & Papa, F.R (2008). Real-Time Redox Measurements during Endoplasmic Reticulum Stress Reveal Interlinked Protein Folding Functions. Cell. 135:933-947. doi:10.1016/j.cell.2008.10.011. PMID 19026441. PMCID 2739138

Chernomoretz, A. et al (2008). Using Cell-ID 1.4 with R for microscope-based cytometry. Current protocols in molecular biology. Unit 14.18. doi:10.1002/0471142727.mb1418s84. PMID 18972382. PMCID 2784696

Ingrid C. Koo, Chen Wang, Sridharan Raghavan, J. Hiroshi Morisaki, Jeffery S. Cox and Eric J. Brown (2008). ESX-1-dependent cytolysis in lysosome secretion and inflammasome activation during mycobacterial infection. Cellular Microbiology. 10(9):1866-1878 doi:10.1111/j.1462-5822.2008.01177.x. PMID 18503637. PMCID 2574867

Erika Rosivatz (2008). Imaging the boundaries—innovative tools for microscopy of living cells and real-time imaging. J Chem. Biol. doi:10.1007/s12154-008-0004-4. PMID 19568794. PMCID 2698318

Lili Niu and Ji Yu (2008). Investigating Intracellular Dynamics of FtsZ Cytoskeleton with Photo-activation Single-molecule Tracking. Biophysical J. 95:2009-2016 doi:10.1529/biophysj.108.128751. PMID 18390602. PMCID 2483766

Liam J. Holt, Andrew N. Krutchinsky, and David O. Morgan (2008). Positive feedback sharpens the anaphase switch. Nature 454:353-357 PMID 18552837 PMCID 2636747

G. Goshima, M. Mayer, N. Zhang, N. Stuurman, and R.D. Vale (2008). Augmin: a protein complex required for centrosome-independent microtubule generation within the spindle. J Cell Biol. 181(3):421-429 PMID 18443220 PMCID 2364697

Griffis E.R., Stuurman N., Vale R.D. (2008). Spindly, a novel protein essential for silencing the spindle assembly checkpoint, recruits dynein to the kinetochore. J Cell Biol. 177(6):1005-1015 PMID 17576797 PMCID 2064361

Total 2008 Citations: 14

2007

Christopher S. Campbell and R. Dyche Mullins (2007). In vivo visualization of type II plasmid segregation: bacterial actin filaments pushing plasmids. J Cell biol. 179(5):1059-1066 doi:10.1083/jcb.200708206. PMID 18039937. PMCID 2099209

Yi Yang, Amira M. El-Ganiny, Geoffrey E. Bray, David A.R. Sanders, and Susan G.W. Kaminskyj (2007). Aspergillus nidulans hypB encodes a Sec7-domain protein important for hyphal morphogenesis. Fungal Genetics and Biology 45(5):749-759. doi:10.1016/j.fgb.2007.11.005. PMID 18248749.

Stuurman, N., Amodaj N., Vale, R.D. (2007). Micro-Manager: Open Source software for light microscope imaging. Microscopy Today. 15(3):42-43. Full Issue (pdf)

Kevin C. Slep and Ronald D. Vale (2007). Structural Basis of Microtubule Plus End Tracking by XMAP215, CLIP-170, and EB1. Molecular Cell 27(6):976-991. doi:10.1016/j.molcel.2007.07.023. PMID 17889670. PMCID 2052927

Liam J. Holt, Jessica E. Hutti, Lewis C. Cantley and David O. Morgan (2007). Evolution of Ime2 Phosphorylation Sites on Cdk1 Substrates Provides a Mechanism to Limit the Effects of the Phosphatase Cdc14 in Meiosis. Molecular Cell 25(5):689-702. doi:10.1016/j.molcel.2007.02.012. PMID 17349956. PMCID 1939968

Tony J. Collins. (2007) ImageJ for microscopy. BioTechniques 43:S25-S30 doi 10.2144/000112517. PMID 112517.

Carpenter, A.E. (2007). Image-based chemical screening. Nature Chemical Biology. 3:461-465. doi:10.1038/nchembio.2007.15. PMID 17637778.

Carpenter, A.E. (2007). Software opens the door to quantitative imaging. Nature Methods. 4:120-121. PMID 17264858.

Gordon A., Colman-Lerner A., Chin T.E., Benjamin K.R., Yu R.C., Brent R. (2007) Single-cell quantification of molecules and rates using open-source microscope-based cytometry. Nature Methods. 4:175-181. PMID 17237792.

Goshima G., Wollman R., Goodwin S.S., Zhang N., Scholey J.M., Vale R.D., Stuurman N. (2007). Genes required for mitotic spindle assembly in Drosophila S2 cells. Science 316:417-421. PMID 17412918. PMCID 2837481

Garner E.C., Campbell C.S., Weibel D.B., Mullins R.D. (2007). Reconstitution of DNA segregation driven by assemebly of a prokaryotic actin homolog. Science. 315:1270-1274. PMID 17332412. PMCID 2851738

Total 2007 Citations: 11

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