top bar

File list

This special page shows all uploaded files.

File list
Items per page:
Search for media name:
Username:
Include old versions of images

Date Name Thumbnail ascSize User Description Versions
19:01, 12 June 2009 MMConfig andor Clara.cfg (file) MMConfig_andor_Clara.cfg 493 B P.nanda Clara configuration example file 1
09:12, 5 October 2009 MMConfig iXon.cfg (file) MMConfig_iXon.cfg 493 B P.nanda Configuration for Andor iXon cameras using uM-1.3.40b 1
16:37, 7 September 2012 Simplest mosaic experiment.bsh (file) Simplest_mosaic_experiment.bsh 1 KB P.nanda * * Uses TTL trigger communcation between Micro-Manager and external * software (Andor iQ) to fire Andor Mosaic device with iQ virtual * camera. * * This program is meant to run concurrently with Andor iQ 2.7 * The iQ Protocol will look like this: * * ... * Trigger In - In7.High * Trigger Out - Out6.Low * Frappa - Mosaic (Mosaic, All, _FRAPPA) * Trigger Out - Out6.High * * Notes: * 1) iQ enumerates the PCU ports from 0-7, but Micro-Manager * enumerates from 1-8. We will assume Micro-Manager's * nomenclature, since Micro-Manager is right ;-) * 2) Micro-Manager sends the Output 8 high, which iQ listens to * 3) Micro-Manager then waits for Input 7 to be high. * 4) There are 2 a bugs: * a) It's not possible for 2 programs to listen to the same * DAC input port * b) iQ has a bug where it cannot set Output 8 low (IDK why) * c) Therefore as workaround for (b) we actually read in both * 7 and 8 as high at the end of the iQ protocol. * * Pariksheet Nanda <p.nanda@andor.com> September 2012 1
08:37, 13 April 2010 AB-4-new-ports.png (file) AB-4-new-ports.png 3 KB P.nanda Andor laser combiner: the result 1
10:45, 20 September 2013 Plugin projector-setup.png (file) Plugin_projector-setup.png 6 KB P.nanda Projector Plugin: Tab 3 of 3: Setup 1
10:43, 20 September 2013 Plugin projector-rois.png (file) Plugin_projector-rois.png 8 KB P.nanda Projector Plugin: Tab 2 of 3: ROIs 1
10:31, 20 September 2013 Plugin projector-point and shoot.png (file) Plugin_projector-point_and_shoot.png 9 KB P.nanda Projector Plugin: Tab 1 of 3: Point and Shoot 1
15:27, 20 September 2013 Micropoint-calibration.png (file) Micropoint-calibration.png 14 KB P.nanda Reduce width from 667px to 635px to match page width. 2
18:11, 25 December 2012 Micro-manager bb.svg.tar.gz (file) Micro-manager_bb.svg.tar.gz 18 KB P.nanda source file for arduino illustration 1
08:37, 13 April 2010 AB-3-reassigned-scan.png (file) AB-3-reassigned-scan.png 19 KB P.nanda Andor laser combiner: after 201-204 have been resassigned, click on scan for hardware changes to refresh the window 1
16:55, 7 July 2013 Alc mscv error.jpg (file) Alc_mscv_error.jpg 22 KB P.nanda Error in Micro-Manager caused by internal ALC setting of laser exceeding rated power. 1
15:37, 28 August 2014 Hcw-multi-camera-devices.png (file) Hcw-multi-camera-devices.png 24 KB P.nanda   1
15:44, 28 August 2014 Pb-corecam-multicam.png (file) Pb-corecam-multicam.png 24 KB P.nanda   1
08:02, 1 November 2012 Pinholes in focus.png (file) Pinholes_in_focus.png 29 KB P.nanda   1
15:35, 28 August 2014 Hcw-add-andor-camera-2.png (file) Hcw-add-andor-camera-2.png 30 KB P.nanda   1
15:40, 28 August 2014 Pb-multicam-defaults.png (file) Pb-multicam-defaults.png 30 KB P.nanda   1
15:21, 28 August 2014 Devicemanager-2-andor-ultras.png (file) Devicemanager-2-andor-ultras.png 33 KB P.nanda   1
15:31, 28 August 2014 Usbview-2-andor-ultras.png (file) Usbview-2-andor-ultras.png 34 KB P.nanda   1
12:27, 31 May 2014 Sequencing.png (file) Sequencing.png 35 KB P.nanda Mosaic3 Sequencing window. 1
15:41, 28 August 2014 Pb-multicam-afterset.png (file) Pb-multicam-afterset.png 37 KB P.nanda   1
18:00, 23 March 2013 UTSW-SD-full.JPG (file) UTSW-SD-full.JPG 41 KB P.nanda Full photo: spinning disk system at UT Southwestern Live Cell Imaging Facility 1
08:35, 13 April 2010 AB-1-com-ports.png (file) AB-1-com-ports.png 44 KB P.nanda Andor Laser Combiner: after restarting Windows with drivers freshly installed, the device manager can list the COM ports of the laser combiner out of order i.e. it orders alphabetically instead of numerically. In this case COM10 should not be made 201, but COM3 would be 201. 1
11:25, 30 July 2011 Good Clara USB Connection cropped.JPG (file) Good_Clara_USB_Connection_cropped.JPG 48 KB P.nanda Microsoft's free utility, UVCview, showing the Andor Clara on it's own USB bus (not sharing the bus with other devices). This is essential to prevent USB buffer overflow errors since the USB stack does not discriminate priority of one device over another. 1
18:09, 23 March 2013 UTSW-SD-optical-train.JPG (file) UTSW-SD-optical-train.JPG 52 KB P.nanda Optical train photo: spinning disk system at UT Southwestern Live Cell Imaging Facility 1
18:08, 23 March 2013 UTSW-SD-scope.JPG (file) UTSW-SD-scope.JPG 52 KB P.nanda Microscope photo: spinning disk system at UT Southwestern Live Cell Imaging Facility 1
09:52, 17 February 2011 04- HW cfg part 2.png (file) 04-_HW_cfg_part_2.png 56 KB P.nanda Finalize configuration settings 1
09:16, 20 September 2013 Plugin-projector-header.png (file) Plugin-projector-header.png 60 KB P.nanda - Black border instead of gray - White background instead of gray 2
17:58, 25 December 2012 Micro-manager bb.png (file) Micro-manager_bb.png 60 KB P.nanda - Added pin numbers - Added headings - Increased scale to 625 px width - Fixed typo (space character before TLV5618) - Moved Fritzing crediting farther up away from caption 2
16:40, 7 July 2013 Libalc x86.tar.gz (file) Libalc_x86.tar.gz 69 KB P.nanda Redistributable library file from Andor ALC SDK 2.0 (32-bit). Use of copyrighted material approved by Glenn Jolleys. 1
15:54, 28 August 2014 Hcw-add-andor-camera-1.png (file) Hcw-add-andor-camera-1.png 71 KB P.nanda Crop image to fit wiki page width, since the wiki doesn't support image scaling. 2
09:52, 17 February 2011 03- HW cfg part 1.png (file) 03-_HW_cfg_part_1.png 87 KB P.nanda Add the Andor Laser Combiner to the Hardware Configuration 1
17:55, 15 January 2013 A2d saturated no blooming.PNG (file) A2d_saturated_no_blooming.PNG 92 KB P.nanda   1
09:50, 17 February 2011 01- Decompress Andor SDK for Laser combiner.png (file) 01-_Decompress_Andor_SDK_for_Laser_combiner.png 92 KB P.nanda Install the Andor Laser Combiner SDK 1
11:47, 25 March 2013 UTSW SD FigureJ.jpg (file) UTSW_SD_FigureJ.jpg 93 KB P.nanda Spinning disk system at UT Southwestern Live Cell Imaging Facility. Made with FigureJ plugin using 5.08 x 3.79 cm to fit to make it fit the wiki's 600 pixel width 1
09:51, 17 February 2011 02- Put Andor SDK libraries folder in Path.png (file) 02-_Put_Andor_SDK_libraries_folder_in_Path.png 110 KB P.nanda Add the Andor Laser Combiner SDK `Libraries' folder to the Windows PATH so that MicroManager can find the DLLs 1
07:08, 27 December 2012 Arduino pinout.svg (file) Arduino_pinout.svg 115 KB P.nanda Pinout set by firmware version 2 1
16:42, 7 July 2013 Libalc x64.tar.gz (file) Libalc_x64.tar.gz 127 KB P.nanda Redistributable library file from Andor ALC SDK 2.0 (64-bit). Use of copyrighted material approved by Glenn Jolleys. 1
17:56, 15 January 2013 Pixel wells saturated vert blooming.PNG (file) Pixel_wells_saturated_vert_blooming.PNG 132 KB P.nanda   1
11:19, 28 May 2014 FullResolution fig mosic3 cal.png (file) FullResolution_fig_mosic3_cal.png 147 KB P.nanda Mosaic 3 calibration images. Made with FigureJ plugin using 5.08 x 3.79 cm to fit to make it fit the wiki's 600 pixel width 1
17:57, 15 January 2013 Em register saturated horiz blooming.PNG (file) Em_register_saturated_horiz_blooming.PNG 152 KB P.nanda   1
10:45, 30 July 2011 Good Clara USB Connection.JPG (file) Good_Clara_USB_Connection.JPG 155 KB P.nanda Microsoft's free utility, UVCview, showing the Andor Clara on it's own USB bus (not sharing the bus with other devices). This is essential to prevent USB buffer overflow errors since the USB stack does not discriminate priority of one device over another. 1
10:50, 30 July 2011 Good Clara USB Connection trimmed.JPG (file) Good_Clara_USB_Connection_trimmed.JPG 161 KB P.nanda Microsoft's free utility, UVCview, showing the Andor Clara on it's own USB bus (not sharing the bus with other devices). This is essential to prevent USB buffer overflow errors since the USB stack does not discriminate priority of one device over another. 1
09:17, 20 September 2013 Plugin-projector-header.tar.gz (file) Plugin-projector-header.tar.gz 178 KB P.nanda - Black border instead of gray - White background instead of gray 2
19:52, 1 May 2014 This doesnt work.png (file) This_doesnt_work.png 180 KB P.nanda AndorSDK3 error using Zyla 4.2 with "AcquisitionWindow" set to "Full Image" 1
19:55, 1 May 2014 This works.png (file) This_works.png 185 KB P.nanda AndorSDK3 Zyla 4.2 snaps an image fine with "AcquisitionWindow" set to "2048x2048" 1
08:37, 13 April 2010 AB-2-reassign-com-port.png (file) AB-2-reassign-com-port.png 222 KB P.nanda Andor laser combiner: Process of reassigning the COM port from COM 7 to COM 201 1
08:02, 1 November 2012 Center emission.png (file) Center_emission.png 288 KB P.nanda   1
07:44, 1 November 2012 Overview of csu alignment.png (file) Overview_of_csu_alignment.png 302 KB P.nanda   1
15:53, 28 August 2014 Mm-snapped-image-multicam.png (file) Mm-snapped-image-multicam.png 913 KB P.nanda Physically resize image to fit wiki page limits, since the wiki doesn't support image scaling. 2
07:02, 10 October 2012 PL2303 DriverInstaller v1413 20110219.gz (file) PL2303_DriverInstaller_v1413_20110219.gz 2.17 MB P.nanda DRIVER: Prolific USB-Serial v1.4.14 Windows 7/XP 1

First page
First page
Last page
Last page
© Micro-Manager : Vale Lab, UCSF 2006-2011 | All Rights Reserved | Contact