top bar

Difference between revisions of "FrameProcessor"

(Replaced content with "'''The plugin FrameProcessor has now been renamed FrameCombiner. [https://micro-manager.org/wiki/FrameCombiner Click here for the Wiki page].'''")
 
Line 1: Line 1:
= FrameProcessor =
+
'''The plugin FrameProcessor has now been renamed FrameCombiner. [https://micro-manager.org/wiki/FrameCombiner Click here for the Wiki page].'''
 
+
A [https://micro-manager.org/ Micro-Manager 2] plugin that can process stack images in time. The processing can be applied in real-time (live mode) or during an acquisition (MDA).
+
 
+
This plugin was inspired by the excellent FrameAverager plugin from [http://www.openpolscope.org/pages/MMPlugin_Frame_Averager.htm OpenPolScope] available on github at https://github.com/LC-PolScope/Micro-Manager-Addons.
+
 
+
The motivation to create this plugin was to make it compatible with Micro-Manager 2 and also add more processing operations. This plugin is not compatible with earlier versions of Micro-Manager.
+
 
+
= Usage =
+
 
+
* Launch Micromanager.
+
* Execute the plugin with Plugin ▶ On-The-Fly Image Processing ▶ Frame Processor.
+
* Launch a live or MDA acquisition.
+
* Set the number of frames you want to process and the algorithm you want to apply on the stack such as mean, max, min, or sum.
+
* The acquisition window displays the processed images (mean image of the last 10 images by default).
+
 
+
Please report any issue to https://github.com/micro-manager/micro-manager/issues.
+
 
+
= Features =
+
 
+
* This plugin can perform several classic operations during '''live''' or '''MDA''' such as <code>mean</code>, <code>sum</code>, <code>max</code> and <code>min</code> on a user-specified number of frames.
+
* Images are processed for each combinations of Z, Channel and Stage Position.
+
* User can choose a set of channels to be ignored by the processor.
+
 
+
= Screenshot =
+
 
+
[[File:FrameProcessor Screenshot.png|600px|thumb|left|alt=Screenshot of the Frame Processor plugin]]
+
 
+
= Authors =
+
 
+
<code>FrameProcessor</code> was written by [mailto:hadrien.mary@gmail.com Hadrien Mary].
+
 
+
This work started in 2016 at the [http://brouhardlab.mcgill.ca/ Gary Brouhard laboratory] at the University of McGill.
+
 
+
 
+
{{Documentation Sidebar}}
+

Latest revision as of 04:50, 17 October 2016

The plugin FrameProcessor has now been renamed FrameCombiner. Click here for the Wiki page.

© Micro-Manager : Vale Lab, UCSF 2006-2011 | All Rights Reserved | Contact