Documentation
Revision as of 15:26, 18 March 2009 by Arthuredelstein (Talk | contribs)
Micro-Manager Documentation
In addition to the main Micro-Manager manual, we maintain here documentation for those aspects of Micro-Manager that are still in flux and/or rapidly changing.
Autofocus configuration
Autofocus setup - Making Micro-Manager use image-based autofocus Autofocus manual - Configure the image-based autofocus
Scripting in Micro-Manager
Script Panel GUI - Introduction to the Script Panel GUI gui object - Documentation of the GUI scripting object mmc object - Documentation of the mmc Micro-Manager core object example Beanshell scripts - A few example scripts with minimal annotation
Matlab and Micro-Manager
Matlab Configuration - Setting up Matlab to run Micro-Manager Roboscope project - Roy Wollman's Roboscope project
Communicating through serial ports using a terminal application
Windows - Configuring HyperTerminal
Coordinates and Directionality in Micro-Manager
Overview -
User contributed adapters and notes
Some of the Micro-Manager users have written adapters that have not (yet) been incorporated into the Micro-Manager distribution. We'll keep information on these adapters right here.
Building the software (for developers)
Building ACE on the Mac - How to build ACE on the Mac Full Build on MacOS X Leopard - How to install and build Micromanager 1.2 and dependencies (tested on MacOS X 10.5.2) Using Eclipse - How to configure Eclipse to compile and debug Micro-Manager Configuration options - Build options on Mac OS X and Linux Building MM on Windows - Different environments and options
Papers citing and/or acknowledging the use of Micro-Manager
Papers citing Micro-Manager - Add your own paper to the list!