top bar

Difference between revisions of "Documentation"

(Micro-Manager Documentation)
Line 9: Line 9:
 
''Scripting in Micro-Manager''
 
''Scripting in Micro-Manager''
 
   [[Script Panel GUI]] - Introduction to the Script Panel GUI
 
   [[Script Panel GUI]] - Introduction to the Script Panel GUI
   [http://valelab.ucsf.edu/~nico/ScriptInterface.html gui object] - Documentation of the GUI scripting object
+
   [http://micro-manager.org/content/doc/mmstudio/org/micromanager/api/ScriptInterface.html gui object] - Documentation of the GUI scripting object
 
   [http://micro-manager.org/content/doc/mmcore_api/html/class_c_m_m_core.html mmc object] - Documentation of the mmc Micro-Manager core object
 
   [http://micro-manager.org/content/doc/mmcore_api/html/class_c_m_m_core.html mmc object] - Documentation of the mmc Micro-Manager core object
 
   [[example Beanshell scripts]] - A few example scripts with minimal annotation
 
   [[example Beanshell scripts]] - A few example scripts with minimal annotation

Revision as of 15:26, 18 March 2009

Micro-Manager Documentation

In addition to the main Micro-Manager manual, we maintain here documentation for those aspects of Micro-Manager that are still in flux and/or rapidly changing.

Autofocus configuration

  Autofocus setup - Making Micro-Manager use image-based autofocus
  Autofocus manual - Configure the image-based autofocus

Scripting in Micro-Manager

  Script Panel GUI - Introduction to the Script Panel GUI
  gui object - Documentation of the GUI scripting object
  mmc object - Documentation of the mmc Micro-Manager core object
  example Beanshell scripts - A few example scripts with minimal annotation

Matlab and Micro-Manager

  Matlab Configuration - Setting up Matlab to run Micro-Manager
  Roboscope project - Roy Wollman's Roboscope project

Communicating through serial ports using a terminal application

  Windows - Configuring HyperTerminal

Coordinates and Directionality in Micro-Manager

  Overview - 


User contributed adapters and notes

Some of the Micro-Manager users have written adapters that have not (yet) been incorporated into the Micro-Manager distribution. We'll keep information on these adapters right here.

Building the software (for developers)

  Building ACE on the Mac - How to build ACE on the Mac
  Full Build on MacOS X Leopard - How to install and build Micromanager 1.2 and dependencies (tested on MacOS X 10.5.2)
  Using Eclipse - How to configure Eclipse to compile and debug Micro-Manager
  Configuration options - Build options on Mac OS X and Linux
  Building MM on Windows - Different environments and options

Papers citing and/or acknowledging the use of Micro-Manager

  Papers citing Micro-Manager - Add your own paper to the list!
© Micro-Manager : Vale Lab, UCSF 2006-2011 | All Rights Reserved | Contact